Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E2E30_RS15280 Genome accession   NZ_CP037913
Coordinates   3316875..3317429 (+) Length   184 a.a.
NCBI ID   WP_133191206.1    Uniprot ID   A0A4V1AD09
Organism   Sphingomonas sp. AAP5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3311875..3322429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E2E30_RS15255 (E2E30_15255) - 3311908..3312996 (-) 1089 WP_133191196.1 alkene reductase -
  E2E30_RS15260 (E2E30_15260) - 3313047..3313940 (+) 894 WP_133191198.1 DMT family transporter -
  E2E30_RS15265 (E2E30_15265) - 3313950..3314630 (+) 681 WP_133191200.1 COQ9 family protein -
  E2E30_RS15270 (E2E30_15270) - 3314718..3314984 (+) 267 WP_133191202.1 FeoA family protein -
  E2E30_RS15275 (E2E30_15275) - 3314986..3316848 (+) 1863 WP_133191204.1 ferrous iron transporter B -
  E2E30_RS15280 (E2E30_15280) ssb 3316875..3317429 (+) 555 WP_133191206.1 single-stranded DNA-binding protein Machinery gene
  E2E30_RS15285 (E2E30_15285) - 3317462..3318985 (+) 1524 WP_133191208.1 PAS domain-containing protein -
  E2E30_RS15290 (E2E30_15290) - 3319023..3319409 (-) 387 WP_133191210.1 response regulator -
  E2E30_RS15295 (E2E30_15295) metW 3319478..3320071 (-) 594 WP_133191212.1 methionine biosynthesis protein MetW -
  E2E30_RS15300 (E2E30_15300) - 3320068..3320496 (-) 429 WP_133191214.1 GNAT family N-acetyltransferase -
  E2E30_RS15305 (E2E30_15305) - 3320493..3321626 (-) 1134 WP_133191216.1 homoserine O-acetyltransferase -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 18674.31 Da        Isoelectric Point: 5.3096

>NTDB_id=350618 E2E30_RS15280 WP_133191206.1 3316875..3317429(+) (ssb) [Sphingomonas sp. AAP5]
MAGGSVNKVIIVGNLGRDPESKSFQNGGKVVNLRIATSETWKDKNTGERKEQTEWHSVAIFNEALGGVAERYLRKGSKVY
IEGALKTRKWQDASGNDKYSTEIVLQGFNGVLTMLDGAPGSGGGGGGGGQRDDFGGNDDFGGGGGGGYGGGQRSGGGGAR
GGAPAGGGGQRGGFADDLDDDVPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=350618 E2E30_RS15280 WP_133191206.1 3316875..3317429(+) (ssb) [Sphingomonas sp. AAP5]
ATGGCGGGCGGCAGCGTCAACAAGGTGATCATCGTCGGCAATCTCGGGCGCGATCCCGAGAGCAAGTCGTTCCAGAATGG
CGGCAAGGTCGTGAACCTGCGCATCGCCACGTCGGAGACGTGGAAGGACAAGAATACCGGCGAGCGCAAGGAACAGACCG
AATGGCATTCGGTCGCGATCTTCAACGAAGCGCTCGGCGGCGTCGCCGAGCGCTATCTGCGCAAGGGTTCGAAGGTCTAT
ATCGAGGGCGCGCTCAAGACGCGCAAATGGCAGGATGCCAGCGGTAACGACAAATATTCGACCGAGATCGTGCTCCAGGG
CTTCAACGGCGTGCTGACGATGCTCGACGGCGCGCCCGGTTCGGGCGGCGGCGGCGGTGGTGGCGGCCAGCGCGACGATT
TCGGCGGGAATGACGATTTCGGCGGCGGTGGTGGCGGCGGCTACGGCGGCGGTCAGCGCAGCGGTGGCGGCGGGGCACGC
GGCGGCGCGCCTGCCGGCGGCGGTGGCCAGCGCGGCGGGTTTGCCGACGATCTGGACGACGACGTACCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V1AD09

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.663

100

0.495
  ssb Vibrio cholerae strain A1552

47.283

100

0.473

Multiple sequence alignment