Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | HPF_RS06505 | Genome accession | NZ_CP037867 |
| Coordinates | 1320839..1321888 (-) | Length | 349 a.a. |
| NCBI ID | WP_066149528.1 | Uniprot ID | A0A1V4CCA3 |
| Organism | Hydrogenophaga pseudoflava strain DSM 1084 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1315839..1326888
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPF_RS06470 (HPF_06485) | - | 1316580..1317194 (-) | 615 | WP_133156106.1 | CDP-alcohol phosphatidyltransferase family protein | - |
| HPF_RS06475 (HPF_06490) | - | 1317291..1317773 (-) | 483 | WP_066149511.1 | DoxX family protein | - |
| HPF_RS06480 (HPF_06495) | - | 1317770..1318627 (-) | 858 | WP_133156107.1 | putative DNA-binding domain-containing protein | - |
| HPF_RS06485 (HPF_06500) | - | 1318624..1319523 (-) | 900 | WP_133156108.1 | DUF692 domain-containing protein | - |
| HPF_RS06490 (HPF_06505) | - | 1319560..1319841 (-) | 282 | WP_066149521.1 | DUF2282 domain-containing protein | - |
| HPF_RS06495 (HPF_06510) | - | 1320017..1320598 (+) | 582 | WP_133158042.1 | sigma-70 family RNA polymerase sigma factor | - |
| HPF_RS06500 (HPF_06515) | - | 1320595..1320801 (+) | 207 | WP_066149526.1 | zf-HC2 domain-containing protein | - |
| HPF_RS06505 (HPF_06520) | pilA | 1320839..1321888 (-) | 1050 | WP_066149528.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| HPF_RS06510 (HPF_06525) | - | 1321918..1323327 (+) | 1410 | WP_133156109.1 | pitrilysin family protein | - |
| HPF_RS06515 (HPF_06530) | - | 1323355..1324674 (+) | 1320 | WP_243721691.1 | pitrilysin family protein | - |
| HPF_RS06520 (HPF_06535) | rsmD | 1324692..1325297 (+) | 606 | WP_133156111.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| HPF_RS06525 (HPF_06540) | coaD | 1325348..1325851 (+) | 504 | WP_127802968.1 | pantetheine-phosphate adenylyltransferase | - |
| HPF_RS06530 (HPF_06545) | - | 1325862..1326161 (+) | 300 | WP_066149543.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| HPF_RS06535 (HPF_06550) | pth | 1326110..1326778 (-) | 669 | WP_066149546.1 | aminoacyl-tRNA hydrolase | - |
Sequence
Protein
Download Length: 349 a.a. Molecular weight: 36554.27 Da Isoelectric Point: 7.4238
>NTDB_id=350293 HPF_RS06505 WP_066149528.1 1320839..1321888(-) (pilA) [Hydrogenophaga pseudoflava strain DSM 1084]
MFSFFRKKPPAPPPVPEPVPAAAPAPSAPVAAPATLPAVVSPPAAPAAPPERKGWLDKLKAGLRKTGSSIATVFTGTQID
DALYEELEAALLMADTGVKATEHLLADLKKRVKESKTTDPAAVKGLLADAIADLLAPLQKPLVIGEHKPTVIMVAGVNGA
GKTTSIGKLTRHLANEGASVLLAAADTFRAAAREQLAVWADRNTVEIVTQEGGDPAAVSFDAVSAGKARGRDVVLVDTAG
RLPTQLHLMEELRKIKRVVQKADGTAPHEVLLVIDGNTGQNALTQVKAFDEALQLTGLVITKLDGTAKGGVVCAIARERP
VPIYFIGVGEKLEDLETFNAREFAQALLN
MFSFFRKKPPAPPPVPEPVPAAAPAPSAPVAAPATLPAVVSPPAAPAAPPERKGWLDKLKAGLRKTGSSIATVFTGTQID
DALYEELEAALLMADTGVKATEHLLADLKKRVKESKTTDPAAVKGLLADAIADLLAPLQKPLVIGEHKPTVIMVAGVNGA
GKTTSIGKLTRHLANEGASVLLAAADTFRAAAREQLAVWADRNTVEIVTQEGGDPAAVSFDAVSAGKARGRDVVLVDTAG
RLPTQLHLMEELRKIKRVVQKADGTAPHEVLLVIDGNTGQNALTQVKAFDEALQLTGLVITKLDGTAKGGVVCAIARERP
VPIYFIGVGEKLEDLETFNAREFAQALLN
Nucleotide
Download Length: 1050 bp
>NTDB_id=350293 HPF_RS06505 WP_066149528.1 1320839..1321888(-) (pilA) [Hydrogenophaga pseudoflava strain DSM 1084]
ATGTTCTCGTTCTTCAGAAAAAAACCGCCTGCGCCCCCACCGGTCCCTGAACCGGTCCCCGCCGCCGCGCCCGCCCCGTC
GGCACCGGTCGCTGCGCCGGCCACGCTGCCGGCCGTCGTCAGCCCGCCGGCTGCTCCCGCAGCGCCGCCCGAGCGCAAGG
GCTGGCTCGACAAGCTCAAGGCCGGCCTGCGCAAGACCGGCTCCAGCATCGCCACCGTCTTCACCGGCACGCAGATCGAC
GACGCGCTCTATGAAGAGCTGGAGGCGGCGCTGCTGATGGCCGACACCGGCGTCAAGGCCACCGAGCACCTGCTGGCCGA
CCTGAAGAAGCGCGTCAAGGAGAGCAAGACCACCGATCCGGCGGCCGTCAAGGGCCTGCTGGCCGACGCCATCGCCGACC
TGCTGGCGCCGCTGCAGAAGCCGCTGGTGATCGGCGAGCACAAGCCGACTGTGATCATGGTCGCGGGCGTCAACGGCGCC
GGCAAGACCACCTCCATCGGCAAGCTCACGCGCCATCTGGCGAACGAAGGCGCCAGCGTGCTGCTGGCCGCTGCCGACAC
CTTCCGCGCCGCGGCCCGCGAGCAGCTGGCCGTCTGGGCCGACCGCAACACGGTGGAGATCGTGACGCAGGAAGGCGGCG
ACCCGGCCGCCGTGAGCTTCGACGCCGTGAGCGCCGGCAAGGCGCGCGGCCGCGACGTGGTGCTGGTGGACACGGCCGGC
CGCCTGCCGACGCAGCTGCACCTGATGGAAGAGCTCCGGAAGATCAAGCGCGTGGTGCAGAAGGCCGACGGCACGGCGCC
GCACGAGGTGCTGCTCGTCATCGACGGCAACACCGGCCAGAACGCGCTGACGCAGGTCAAGGCCTTCGACGAGGCGCTGC
AACTCACCGGCCTGGTCATCACCAAACTCGACGGCACGGCCAAGGGCGGCGTGGTCTGCGCCATCGCGCGCGAGCGGCCG
GTGCCGATCTACTTCATCGGCGTCGGTGAAAAGCTCGAAGACCTGGAAACCTTCAACGCACGCGAGTTTGCGCAGGCGCT
GTTGAACTGA
ATGTTCTCGTTCTTCAGAAAAAAACCGCCTGCGCCCCCACCGGTCCCTGAACCGGTCCCCGCCGCCGCGCCCGCCCCGTC
GGCACCGGTCGCTGCGCCGGCCACGCTGCCGGCCGTCGTCAGCCCGCCGGCTGCTCCCGCAGCGCCGCCCGAGCGCAAGG
GCTGGCTCGACAAGCTCAAGGCCGGCCTGCGCAAGACCGGCTCCAGCATCGCCACCGTCTTCACCGGCACGCAGATCGAC
GACGCGCTCTATGAAGAGCTGGAGGCGGCGCTGCTGATGGCCGACACCGGCGTCAAGGCCACCGAGCACCTGCTGGCCGA
CCTGAAGAAGCGCGTCAAGGAGAGCAAGACCACCGATCCGGCGGCCGTCAAGGGCCTGCTGGCCGACGCCATCGCCGACC
TGCTGGCGCCGCTGCAGAAGCCGCTGGTGATCGGCGAGCACAAGCCGACTGTGATCATGGTCGCGGGCGTCAACGGCGCC
GGCAAGACCACCTCCATCGGCAAGCTCACGCGCCATCTGGCGAACGAAGGCGCCAGCGTGCTGCTGGCCGCTGCCGACAC
CTTCCGCGCCGCGGCCCGCGAGCAGCTGGCCGTCTGGGCCGACCGCAACACGGTGGAGATCGTGACGCAGGAAGGCGGCG
ACCCGGCCGCCGTGAGCTTCGACGCCGTGAGCGCCGGCAAGGCGCGCGGCCGCGACGTGGTGCTGGTGGACACGGCCGGC
CGCCTGCCGACGCAGCTGCACCTGATGGAAGAGCTCCGGAAGATCAAGCGCGTGGTGCAGAAGGCCGACGGCACGGCGCC
GCACGAGGTGCTGCTCGTCATCGACGGCAACACCGGCCAGAACGCGCTGACGCAGGTCAAGGCCTTCGACGAGGCGCTGC
AACTCACCGGCCTGGTCATCACCAAACTCGACGGCACGGCCAAGGGCGGCGTGGTCTGCGCCATCGCGCGCGAGCGGCCG
GTGCCGATCTACTTCATCGGCGTCGGTGAAAAGCTCGAAGACCTGGAAACCTTCAACGCACGCGAGTTTGCGCAGGCGCT
GTTGAACTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
55.718 |
97.708 |
0.544 |