Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HPF_RS04485 Genome accession   NZ_CP037867
Coordinates   906584..906979 (+) Length   131 a.a.
NCBI ID   WP_066158732.1    Uniprot ID   A0A4P6WXS1
Organism   Hydrogenophaga pseudoflava strain DSM 1084     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 901584..911979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF_RS04465 (HPF_04465) - 902926..903921 (+) 996 WP_165961649.1 GDSL-type esterase/lipase family protein -
  HPF_RS04470 (HPF_04470) hemL 903950..905248 (-) 1299 WP_066158738.1 glutamate-1-semialdehyde 2,1-aminomutase -
  HPF_RS04475 (HPF_04475) - 905256..906206 (-) 951 WP_079364494.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  HPF_RS04480 (HPF_04480) - 906334..906507 (+) 174 WP_066158881.1 rubredoxin -
  HPF_RS04485 (HPF_04485) pilG 906584..906979 (+) 396 WP_066158732.1 response regulator Regulator
  HPF_RS04490 (HPF_04490) - 906979..907344 (+) 366 WP_066158730.1 response regulator -
  HPF_RS04495 (HPF_04495) - 907373..907912 (+) 540 WP_066158728.1 chemotaxis protein CheW -
  HPF_RS04500 (HPF_04500) - 908009..910264 (+) 2256 WP_066158725.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14518.78 Da        Isoelectric Point: 7.1331

>NTDB_id=350292 HPF_RS04485 WP_066158732.1 906584..906979(+) (pilG) [Hydrogenophaga pseudoflava strain DSM 1084]
MNPTPTFKVLVVDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALAKINDYLPDIVFCDILMPRLDGYQTCAIIKRNARFAN
IPVVMLSSKDGVFDKARGRMVGSQEYLTKPFTKDQLLQAVQQFGAHLTGAA

Nucleotide


Download         Length: 396 bp        

>NTDB_id=350292 HPF_RS04485 WP_066158732.1 906584..906979(+) (pilG) [Hydrogenophaga pseudoflava strain DSM 1084]
GTGAATCCGACGCCCACATTCAAAGTTCTGGTGGTCGACGACAGCAACACCATCCGTCGCAGTGCAGAAATCTTTCTCAA
GCAGGGCGGGCACGAGGTGCTGCTGGCAGAGGATGGTTTTGATGCGCTGGCCAAAATCAACGACTACCTGCCCGACATCG
TGTTCTGCGACATCCTGATGCCGCGGCTGGACGGGTATCAGACCTGCGCGATCATCAAGCGCAACGCCCGATTCGCCAAC
ATTCCGGTCGTGATGCTGTCGTCCAAAGATGGCGTGTTCGACAAGGCGCGGGGCCGCATGGTCGGCTCGCAGGAATACCT
CACCAAACCGTTTACCAAAGACCAGCTGCTGCAGGCTGTGCAGCAGTTTGGCGCCCACCTCACCGGAGCCGCATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P6WXS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

64.655

88.55

0.573

Multiple sequence alignment