Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   GKC13_RS01530 Genome accession   NZ_CP046134
Coordinates   275192..277210 (+) Length   672 a.a.
NCBI ID   WP_207559845.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MAG_rmk202_sterm     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 270192..282210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC13_RS01510 (GKC13_01505) - 271416..272447 (+) 1032 WP_011226532.1 3-deoxy-7-phosphoheptulonate synthase -
  GKC13_RS01515 (GKC13_01510) - 272545..273576 (+) 1032 WP_002947699.1 3-deoxy-7-phosphoheptulonate synthase -
  GKC13_RS01520 (GKC13_01515) acpS 273580..273939 (+) 360 WP_002951878.1 holo-ACP synthase -
  GKC13_RS01525 (GKC13_01520) alr 273960..275063 (+) 1104 WP_179971048.1 alanine racemase -
  GKC13_RS01530 (GKC13_01525) recG/mmsA 275192..277210 (+) 2019 WP_207559845.1 ATP-dependent DNA helicase RecG Machinery gene
  GKC13_RS01535 (GKC13_01530) - 277865..278830 (-) 966 WP_084830918.1 asparaginase -
  GKC13_RS01540 (GKC13_01535) - 278904..280289 (+) 1386 WP_011226527.1 Cof-type HAD-IIB family hydrolase -
  GKC13_RS01550 (GKC13_01545) - 280407..281409 (+) 1003 Protein_296 DUF6574 domain-containing protein -
  GKC13_RS01555 - 281454..281594 (+) 141 WP_172838683.1 hypothetical protein -

Sequence

Protein


Download         Length: 672 a.a.        Molecular weight: 75526.02 Da        Isoelectric Point: 6.2563

>NTDB_id=350140 GKC13_RS01530 WP_207559845.1 275192..277210(+) (recG/mmsA) [Streptococcus thermophilus strain MAG_rmk202_sterm]
MIQLDSPIADLKGFGPKSAEKFTKLDLHTVGDLLLYFPFRYEDFKSKSIFELMDGEKAVITGTVVTPANVQYYGFKRNRL
SFKIKQGEAVIAINFFNQPYLVDKFEVGAEVAIFGKWDRKKSAVTGMKVLAHVEDDMQPVYHVAQGVSQAQLIKAIKVAF
DSGALNLLEESLPQVLMDKYRLIGRQEAVRVMHFPKDLAEYNQALRRIKFEELFYFQMNLQVLKAENKSETNGLAISYDE
VKIKAKIATLPFPLTKAQERSLSEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQ
SLKGLFPELKVVLLTSGMKMADKKVALSKIESGEAQMIVGTHSLIQDAVIYHKLGLVITDEQHRFGVNQRRIFREKGDNP
DVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKTIITRWVKHEQLDTVLTWIKSELEKDAQVYFISPLIEESESLDLK
NAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQL
RGRVGRGDKQSYCVLVANPKNDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEAR
RVASQIVSDPNWHENPDWQVLEAHLRNQAEFD

Nucleotide


Download         Length: 2019 bp        

>NTDB_id=350140 GKC13_RS01530 WP_207559845.1 275192..277210(+) (recG/mmsA) [Streptococcus thermophilus strain MAG_rmk202_sterm]
ATGATTCAACTAGATTCACCAATTGCAGATTTGAAGGGCTTTGGTCCTAAGTCCGCTGAAAAATTTACCAAATTAGATTT
ACACACAGTTGGGGACCTCTTGCTTTATTTTCCTTTTCGATATGAAGATTTTAAGAGTAAGTCCATCTTTGAACTGATGG
ATGGAGAAAAGGCCGTCATTACAGGGACAGTGGTAACACCGGCCAATGTGCAGTATTATGGCTTTAAACGTAATCGTCTT
AGCTTTAAAATAAAGCAGGGTGAGGCTGTGATTGCCATTAATTTCTTTAATCAGCCTTATCTTGTGGACAAGTTTGAGGT
GGGGGCAGAAGTGGCTATCTTTGGCAAGTGGGACCGTAAGAAGTCTGCAGTGACTGGTATGAAAGTCTTGGCTCATGTTG
AGGACGATATGCAGCCAGTCTACCATGTGGCTCAGGGTGTTAGTCAGGCCCAGCTGATAAAGGCTATAAAGGTAGCTTTT
GACAGTGGCGCCCTTAATTTGTTGGAGGAAAGTCTCCCCCAAGTGCTGATGGACAAGTATCGTCTCATAGGACGTCAAGA
GGCTGTGCGTGTCATGCATTTTCCTAAAGATTTGGCTGAATATAATCAGGCCCTACGTAGGATTAAGTTTGAGGAGCTCT
TTTATTTCCAGATGAATTTACAGGTGCTAAAGGCTGAGAATAAATCAGAGACCAATGGACTAGCGATTTCTTACGATGAG
GTAAAAATAAAAGCCAAGATTGCTACCCTTCCTTTCCCTCTGACCAAAGCCCAGGAGCGCAGTTTATCAGAAATCCTAGC
TGATATGAAATCTGGGGCTCACATGAACCGTCTCTTGCAGGGAGACGTGGGCTCAGGAAAGACAGTTATTGCTAGTCTTG
CCATGTATGGGGCTTATACGGCAGGATTGCAGTCTGCCCTTATGGTGCCGACGGAAATCTTAGCAGAGCAGCATTATCAG
AGTTTGAAGGGACTTTTTCCTGAGCTAAAGGTAGTCCTCTTAACTTCTGGGATGAAGATGGCAGATAAGAAAGTAGCTCT
TTCTAAAATTGAGTCTGGGGAGGCTCAAATGATTGTGGGAACTCACTCACTGATTCAGGATGCGGTGATTTATCATAAAC
TTGGGTTGGTGATTACTGATGAACAGCACCGATTTGGAGTTAATCAACGTCGTATTTTCCGAGAGAAGGGAGACAATCCT
GATGTCCTCATGATGACAGCAACACCCATTCCTAGAACCTTGGCAATCACTGCCTTTGGGGAGATGGATGTGTCAATCAT
TGATCAGATGCCGGCTGGACGTAAGACTATTATTACCCGTTGGGTTAAACATGAGCAACTAGACACCGTATTGACTTGGA
TTAAGAGTGAGTTGGAAAAAGATGCTCAGGTCTATTTTATTTCTCCTTTGATTGAAGAGTCTGAGTCTCTTGATTTGAAA
AATGCTGTTGCCCTTCATCAGGAACTCACAGAGTTTTTTGGAGATTCAGCTACGGTGGCTCTGATGCATGGTCGGATGAA
AAATGATGAAAAAGACCAAATTATGCAGGATTTTAAGGATAAAAAATCTCAGATTTTAGTATCAACCACAGTTATTGAAG
TTGGAGTTAACGTACCTAATGCTACGGTTATGGTCATTATGGATGCGGATCGTTTTGGACTTAGCCAGCTTCACCAGCTT
CGAGGCCGTGTAGGGCGTGGAGACAAGCAGTCTTACTGTGTCTTGGTGGCTAATCCTAAAAATGATACCGGTAAAAAACG
CATGCAGGCCATGTGTGAGACTACGGATGGTTTTGTTTTAGCAGAAGAGGACCTTAAAATGCGTGGCTCAGGAGAGATTT
TCGGGACGCGGCAGTCAGGCATTCCTGAATTTCAGGTGGCTGATATTGTGGAAGACTATAATATCCTAGAAGAAGCAAGG
CGCGTGGCCAGTCAAATTGTTTCTGACCCTAACTGGCATGAGAATCCTGATTGGCAGGTGCTAGAAGCTCATTTGAGAAA
CCAAGCTGAGTTTGACTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(255-412)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(594-667)

Helicase conserved C-terminal domain (Helicase_C)

(457-567)

RecG wedge domain (RecG_wedge)

(11-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

70.79

99.851

0.707
  recG/mmsA Streptococcus pneumoniae R36A

70.79

99.851

0.707
  recG Bacillus subtilis subsp. subtilis str. 168

49.85

99.107

0.494
  recG Neisseria meningitidis strain C311

39.079

100

0.391