Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   GJV39_RS11885 Genome accession   NZ_CP046114
Coordinates   2337400..2339481 (-) Length   693 a.a.
NCBI ID   WP_005711117.1    Uniprot ID   -
Organism   Glaesserella parasuis strain SCW0912     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2332400..2344481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV39_RS11855 (GJV39_11855) - 2334031..2334789 (-) 759 WP_021110071.1 DeoR/GlpR family DNA-binding transcription regulator -
  GJV39_RS11860 (GJV39_11860) - 2334925..2335248 (-) 324 WP_021110072.1 AzlD domain-containing protein -
  GJV39_RS11865 (GJV39_11865) - 2335248..2335940 (-) 693 WP_021110073.1 AzlC family ABC transporter permease -
  GJV39_RS11870 (GJV39_11870) lptM 2336026..2336112 (-) 87 WP_071610592.1 LPS translocon maturation chaperone LptM -
  GJV39_RS11875 (GJV39_11875) - 2336376..2336633 (-) 258 WP_016528650.1 hypothetical protein -
  GJV39_RS11880 (GJV39_11880) - 2336718..2337116 (-) 399 WP_005711124.1 YgiW/YdeI family stress tolerance OB fold protein -
  GJV39_RS11885 (GJV39_11885) recG 2337400..2339481 (-) 2082 WP_005711117.1 ATP-dependent DNA helicase RecG Machinery gene
  GJV39_RS11890 (GJV39_11890) - 2339594..2340799 (-) 1206 WP_021110075.1 cupin domain-containing protein -
  GJV39_RS11895 (GJV39_11895) - 2340875..2341663 (-) 789 WP_021110076.1 BPL-N domain-containing protein -
  GJV39_RS11900 (GJV39_11900) - 2341747..2342313 (+) 567 WP_021110077.1 biotin transporter BioY -
  GJV39_RS11905 (GJV39_11905) - 2342444..2343253 (-) 810 WP_005711109.1 Cof-type HAD-IIB family hydrolase -
  GJV39_RS11910 (GJV39_11910) - 2343377..2344054 (+) 678 WP_021110078.1 phosphoribosyltransferase family protein -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77307.47 Da        Isoelectric Point: 8.4430

>NTDB_id=350116 GJV39_RS11885 WP_005711117.1 2337400..2339481(-) (recG) [Glaesserella parasuis strain SCW0912]
MNQQLLDGVPLTALSGVGAAISEKLSRIGINNVQDLLFHLPLRYEDRTRITPIADVRPESFATVEGFVQLTEVQFGRRPI
LSTTISDGTSKITLKFFNFNAGMKNSLATGVRVKAFGEIKRGRFMAEMHHPEYQIIRGNQPLELAETLTPIYPTTEGLKQ
ASLRKLTDQALALLERVQVAELLPDEFNPHKYSLKEALQLLHRPPPSVSSELLDKGEHPAQKRLIFEELLAHNLAMQQVR
MGVQQHFAEPLCYQTDLKQRFLATLPFQPTNAQSRVTAEIEQDLAKPFPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHAHNFANWLRPFGIEVGWLAGKVKGKARTAQLEAIKNGDVQMIIGTHALFQDQVEFHHLALVIIDEQH
RFGVHQRLTLREKGAKGDVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEVVRRVYQACK
NEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQAIMAEFKAADIDLLVATTVIEVGVDVP
NASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLMYKAPLGKISTKRLQVLRDSQDGFVIAEKDLEIRGPGEVLGTKQ
TGMAEFKIANLMRDRKMIPLVQSYAKQLTLKYPDTAKQLIRRWLDEKTVYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=350116 GJV39_RS11885 WP_005711117.1 2337400..2339481(-) (recG) [Glaesserella parasuis strain SCW0912]
ATGAACCAACAACTATTAGACGGTGTACCGCTAACCGCCCTTTCGGGTGTTGGGGCGGCGATTTCAGAGAAACTCAGTCG
GATCGGCATTAATAACGTGCAAGATCTGCTATTCCATTTGCCGCTACGGTATGAAGACCGTACTCGGATCACGCCGATTG
CCGATGTTCGTCCTGAAAGTTTTGCGACGGTTGAAGGCTTTGTGCAACTGACGGAAGTACAATTCGGTCGTCGCCCGATT
TTAAGTACCACGATTTCTGACGGCACGAGCAAAATTACTCTGAAATTCTTTAATTTCAATGCGGGAATGAAAAATAGTCT
GGCGACTGGCGTAAGGGTCAAAGCCTTTGGTGAGATTAAACGTGGTCGCTTTATGGCAGAAATGCATCACCCTGAATATC
AAATTATTCGGGGAAATCAACCGCTTGAGCTGGCAGAAACATTAACACCGATTTACCCGACAACCGAAGGCTTGAAGCAA
GCCTCTTTGCGTAAATTAACCGATCAAGCCTTAGCGTTACTTGAGCGTGTGCAAGTGGCAGAATTGCTTCCCGATGAATT
TAATCCACACAAATATAGCTTAAAAGAAGCCTTACAGTTGTTGCATCGACCGCCGCCGAGTGTGTCGTCCGAATTGTTAG
ATAAAGGTGAACACCCTGCACAAAAACGACTGATTTTTGAAGAGTTGTTGGCACATAATTTGGCAATGCAACAGGTGCGA
ATGGGCGTGCAACAACACTTTGCTGAACCGCTATGTTATCAAACCGATTTAAAACAACGCTTTTTGGCGACTTTGCCGTT
TCAGCCGACTAACGCCCAAAGTCGTGTAACCGCAGAGATTGAACAGGATTTGGCGAAACCTTTCCCGATGATGCGACTGG
TGCAAGGCGATGTGGGTTCAGGCAAAACCCTTGTGGCAGCATTGGCGGCATTACTGGCGATTGACAATGGTAAACAGGTG
GCGTTAATGGCACCAACCGAAATTCTCGCCGAGCAACACGCTCACAATTTTGCCAACTGGTTGCGACCTTTTGGGATTGA
AGTGGGCTGGTTAGCTGGCAAAGTGAAAGGTAAAGCGAGAACAGCTCAGTTGGAAGCGATTAAAAACGGCGATGTTCAGA
TGATTATCGGCACGCACGCCCTGTTTCAAGATCAGGTGGAATTTCATCATCTTGCTCTTGTGATTATTGATGAACAGCAC
CGCTTTGGTGTACATCAGCGTTTAACCCTACGCGAGAAAGGGGCGAAGGGCGATGTCTATCCTCACCAGTTGATTATGAC
CGCAACGCCTATTCCACGCACCTTAGCGATGACTGTCTATGCGGATTTGGATACGTCCATTATTGACGAACTTCCCCCAG
GGCGAACGCCGATTACGACGGTGGCGATTTCAGAAGATCGCCGAGATGAAGTGGTTCGCCGTGTTTATCAAGCCTGTAAA
AATGAAAAACGCCAAGCCTATTGGGTCTGTACGCTAATTGATGAGTCGGAAGTATTGGAAGCACAAGCGGCAGCGGCGAT
TGCCGAAGATTTGCAACGAGCCTTGCCAGATTTGCGGATTGGCTTGGTTCACGGGCGAATGAAACCGCAAGAAAAACAGG
CGATTATGGCGGAATTTAAGGCGGCAGATATTGATTTGTTAGTCGCAACAACAGTGATTGAAGTCGGCGTAGATGTGCCG
AATGCCAGTTTGATGATTATCGAAAATTCCGAACGCTTGGGGCTGGCACAGTTGCACCAACTGCGTGGGCGTGTCGGGCG
TGGGGCGACGGCTTCCCATTGTGTCTTGATGTACAAAGCCCCATTGGGTAAAATTTCAACTAAGCGTTTACAGGTGCTGA
GAGATAGCCAAGATGGCTTTGTGATTGCTGAAAAAGATTTGGAAATTCGAGGACCAGGCGAAGTGCTAGGCACAAAACAG
ACGGGAATGGCAGAGTTCAAGATTGCAAATTTAATGCGAGATCGTAAGATGATCCCGTTGGTGCAGAGCTACGCTAAACA
GCTAACGTTAAAATATCCCGATACAGCTAAACAGCTAATTCGCCGTTGGCTTGATGAAAAGACGGTTTATAGTAATGCGT
AA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(293-407)

Helicase conserved C-terminal domain (Helicase_C)

(475-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-674)

RecG wedge domain (RecG_wedge)

(16-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.481

97.403

0.482
  recG Bacillus subtilis subsp. subtilis str. 168

39.794

98.268

0.391
  recG/mmsA Streptococcus pneumoniae R6

39.482

94.661

0.374
  recG/mmsA Streptococcus pneumoniae R36A

39.482

94.661

0.374