Detailed information NTG0350104

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: GJV39_RS09565
• Genome accession: NZ_CP046114
• Coordinates: 1902781..1903497 (-)
• Length: 238 a.a.
• NCBI ID: WP_005713175.1
• Uniprot ID: -
• Organism: Glaesserella parasuis strain SCW0912
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1897781..1908497

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GJV39_RS09525 (GJV39_09525)	-	1897880..1898167 (-)	288	WP_005713186.1	co-chaperone GroES	-
GJV39_RS12530 (GJV39_09530)	-	1898375..1898437 (-)	63	Protein_1874	RNA-guided endonuclease TnpB family protein	-
GJV39_RS09535 (GJV39_09535)	qseC	1898559..1899959 (-)	1401	WP_005713184.1	quorum sensing histidine kinase QseC	-
GJV39_RS09540 (GJV39_09540)	ciaR	1899946..1900617 (-)	672	WP_021110353.1	response regulator	Regulator
GJV39_RS09545 (GJV39_09545)	-	1900678..1901043 (-)	366	WP_021110352.1	YgiW/YdeI family stress tolerance OB fold protein	-
GJV39_RS09550 (GJV39_09550)	-	1901212..1902132 (-)	921	WP_080691034.1	TonB-dependent receptor domain-containing protein	-
GJV39_RS09555 (GJV39_09555)	rpmG	1902237..1902407 (-)	171	WP_005624479.1	50S ribosomal protein L33	-
GJV39_RS09560 (GJV39_09560)	rpmB	1902419..1902655 (-)	237	WP_006251446.1	50S ribosomal protein L28	-
GJV39_RS09565 (GJV39_09565)	radC	1902781..1903497 (-)	717	WP_005713175.1	RadC family protein	Machinery gene
GJV39_RS09570 (GJV39_09570)	coaBC	1903667..1904869 (+)	1203	WP_021110350.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
GJV39_RS09575 (GJV39_09575)	-	1904879..1905205 (+)	327	WP_005713172.1	hypothetical protein	-
GJV39_RS09580 (GJV39_09580)	dut	1905231..1905686 (+)	456	WP_021110349.1	dUTP diphosphatase	-
GJV39_RS09585 (GJV39_09585)	slmA	1905695..1906300 (+)	606	WP_005713169.1	nucleoid occlusion factor SlmA	-
GJV39_RS09590 (GJV39_09590)	-	1906308..1906532 (+)	225	WP_005713165.1	YheU family protein	-
GJV39_RS09595 (GJV39_09595)	crp	1906599..1907273 (+)	675	WP_010787261.1	cAMP-activated global transcriptional regulator CRP	Regulator
GJV39_RS09600 (GJV39_09600)	-	1907528..1907779 (+)	252	WP_223300025.1	hypothetical protein	-
GJV39_RS09605 (GJV39_09605)	-	1907818..1907964 (+)	147	WP_021110348.1	hypothetical protein	-

Sequence

Protein

• Length: 238 a.a.
• Molecular weight: 27139.26 Da
• Isoelectric Point: 4.7438

>NTDB_id=350104 GJV39_RS09565 WP_005713175.1 1902781..1903497(-) (radC) [Glaesserella parasuis strain SCW0912]
MNESSSELMPREKLLKFGAEALSDAELLAIFLRTGIKGIPVMDLSESVLTAFGSLRGLLSATLEDFCKIKGLGQIQYIQL
QATKEMTKRYLSQQMKVNEMVDSPYLAVMYFQSELESWEREVFMVIFLDNQNRLIKTEKMFYGTINQASVHPREIIKEAL
KCNAAAILVAHNHPSGNCNPSEADRFLTRKIEMACDLVDIRFVDHIIVGKGDYFSFEEEKFEQENSEFSPCLDELKQV

Nucleotide

• Length: 717 bp

>NTDB_id=350104 GJV39_RS09565 WP_005713175.1 1902781..1903497(-) (radC) [Glaesserella parasuis strain SCW0912]
ATGAATGAAAGTTCTAGTGAATTAATGCCAAGAGAAAAATTGCTGAAATTTGGTGCTGAAGCCTTAAGTGATGCTGAGCT
ATTGGCAATCTTTTTACGTACAGGAATTAAAGGGATACCCGTGATGGATCTATCGGAAAGCGTACTCACTGCCTTTGGTT
CATTACGGGGATTGCTGTCAGCAACATTAGAAGATTTCTGTAAAATCAAAGGATTAGGACAAATTCAGTATATTCAACTT
CAGGCAACCAAAGAGATGACGAAACGCTATTTATCGCAACAAATGAAAGTAAATGAAATGGTAGATAGCCCCTATTTAGC
CGTAATGTATTTTCAATCGGAATTGGAATCTTGGGAGCGAGAAGTATTTATGGTGATCTTTTTAGATAACCAAAATAGGT
TGATCAAAACAGAAAAAATGTTTTACGGTACGATCAACCAAGCCTCAGTTCACCCTCGTGAAATCATTAAAGAAGCCTTG
AAGTGTAATGCCGCCGCCATTTTAGTTGCACATAACCACCCATCTGGCAACTGCAATCCAAGTGAGGCAGATCGGTTTTT
GACTCGAAAAATAGAAATGGCGTGTGATTTAGTCGATATTCGCTTTGTTGATCATATTATTGTTGGCAAAGGTGACTATT
TTTCGTTCGAAGAAGAAAAGTTTGAACAAGAAAATAGCGAATTTTCCCCTTGTTTAGATGAACTAAAGCAAGTATAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-220)

• UPF0758 N-terminal (UPF0758_N) (5-77)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	61.111	90.756	0.555