Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   GJV39_RS09540 Genome accession   NZ_CP046114
Coordinates   1899946..1900617 (-) Length   223 a.a.
NCBI ID   WP_021110353.1    Uniprot ID   -
Organism   Glaesserella parasuis strain SCW0912     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1894946..1905617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV39_RS09520 (GJV39_09520) groL 1896125..1897768 (-) 1644 WP_010787268.1 chaperonin GroEL -
  GJV39_RS09525 (GJV39_09525) - 1897880..1898167 (-) 288 WP_005713186.1 co-chaperone GroES -
  GJV39_RS12530 (GJV39_09530) - 1898375..1898437 (-) 63 Protein_1874 RNA-guided endonuclease TnpB family protein -
  GJV39_RS09535 (GJV39_09535) qseC 1898559..1899959 (-) 1401 WP_005713184.1 quorum sensing histidine kinase QseC -
  GJV39_RS09540 (GJV39_09540) ciaR 1899946..1900617 (-) 672 WP_021110353.1 response regulator Regulator
  GJV39_RS09545 (GJV39_09545) - 1900678..1901043 (-) 366 WP_021110352.1 YgiW/YdeI family stress tolerance OB fold protein -
  GJV39_RS09550 (GJV39_09550) - 1901212..1902132 (-) 921 WP_080691034.1 TonB-dependent receptor domain-containing protein -
  GJV39_RS09555 (GJV39_09555) rpmG 1902237..1902407 (-) 171 WP_005624479.1 50S ribosomal protein L33 -
  GJV39_RS09560 (GJV39_09560) rpmB 1902419..1902655 (-) 237 WP_006251446.1 50S ribosomal protein L28 -
  GJV39_RS09565 (GJV39_09565) radC 1902781..1903497 (-) 717 WP_005713175.1 RadC family protein Machinery gene
  GJV39_RS09570 (GJV39_09570) coaBC 1903667..1904869 (+) 1203 WP_021110350.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  GJV39_RS09575 (GJV39_09575) - 1904879..1905205 (+) 327 WP_005713172.1 hypothetical protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25440.12 Da        Isoelectric Point: 6.0341

>NTDB_id=350103 GJV39_RS09540 WP_021110353.1 1899946..1900617(-) (ciaR) [Glaesserella parasuis strain SCW0912]
MRILLVEDDPLIGEGLKLGLSKSGFSVDWFADGRSGLEALSSAPYDAVVLDLTLPKMDGLEVLQSWRRANQDVPVLILTA
RDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRRYGHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLEL
FMHNKDRVLTRSFIEEKLYTWDDEVSSNALEVHIYNLRQKLGKQFIRTVHGVGYALGKNDEVA

Nucleotide


Download         Length: 672 bp        

>NTDB_id=350103 GJV39_RS09540 WP_021110353.1 1899946..1900617(-) (ciaR) [Glaesserella parasuis strain SCW0912]
ATGCGTATTTTATTAGTTGAAGACGATCCGTTGATCGGTGAAGGGCTAAAACTTGGTTTGAGTAAATCTGGCTTTAGTGT
GGACTGGTTTGCCGATGGCAGATCTGGCTTAGAGGCGTTAAGTTCTGCTCCTTATGATGCCGTTGTTCTCGATCTCACCT
TGCCTAAAATGGACGGACTTGAGGTGTTACAAAGTTGGCGACGGGCAAATCAAGATGTGCCAGTGCTAATTTTGACTGCA
AGAGATACCCTTGATGAACGTATCACTGGGCTACAACGTGGTGCAGATGATTATCTCTGTAAACCTTTTGCTCTCGCAGA
AGTTGTAGCTCGTTTACAAGCTTTGATCCGCCGTCGTTATGGGCATACCAACCCCGTGATTGAACATAGTTTAGTTAAAT
TCGATCCAAATCAACGCAAAGTGTTTCTTCGGGAGCAAGAAGTCACGCTAACCACTCGAGAGTACAATTTGCTTGAGTTA
TTTATGCACAATAAAGATCGTGTTCTCACCCGTTCTTTCATTGAGGAGAAACTCTATACTTGGGACGATGAGGTCAGTAG
CAACGCTCTTGAAGTCCATATCTACAATTTACGTCAGAAACTCGGAAAACAGTTTATTCGTACCGTACACGGTGTCGGCT
ACGCCTTAGGAAAAAACGATGAAGTTGCTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-216)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

35.683

100

0.363
  ciaR Streptococcus pneumoniae D39

35.683

100

0.363
  ciaR Streptococcus pneumoniae R6

35.683

100

0.363
  ciaR Streptococcus pneumoniae TIGR4

35.683

100

0.363