Detailed information NTG0350074

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: E1H34_RS03760
• Genome accession: NZ_CP037822
• Coordinates: 782383..783090 (+)
• Length: 235 a.a.
• NCBI ID: WP_009888460.1
• Uniprot ID: A0A9Q8EBL8
• Organism: Clostridioides difficile strain Cd11
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 777383..788090

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E1H34_RS03735 (E1H34_03830)	cdd1	778178..778423 (+)	246	WP_009888450.1	protein Cdd1	-
E1H34_RS03740 (E1H34_03835)	-	778641..778910 (-)	270	WP_003426848.1	DUF3795 domain-containing protein	-
E1H34_RS03745 (E1H34_03845)	-	779788..780525 (-)	738	WP_003439186.1	ABC transporter permease	-
E1H34_RS03750 (E1H34_03850)	-	780537..781298 (-)	762	WP_003439185.1	ABC transporter permease	-
E1H34_RS03755 (E1H34_03855)	-	781298..782221 (-)	924	WP_025985748.1	ABC transporter ATP-binding protein	-
E1H34_RS03760 (E1H34_03860)	scnR	782383..783090 (+)	708	WP_009888460.1	response regulator transcription factor	Regulator
E1H34_RS03765 (E1H34_03865)	-	783135..784541 (+)	1407	WP_021367592.1	sensor histidine kinase	-
E1H34_RS03770 (E1H34_03870)	-	786393..786782 (+)	390	WP_003426867.1	BlaI/MecI/CopY family transcriptional regulator	-
E1H34_RS03775 (E1H34_03875)	-	787510..787980 (+)	471	WP_009888463.1	VOC family protein	-

Sequence

Protein

• Length: 235 a.a.
• Molecular weight: 26716.17 Da
• Isoelectric Point: 6.1467

>NTDB_id=350074 E1H34_RS03760 WP_009888460.1 782383..783090(+) (scnR) [Clostridioides difficile strain Cd11]
MESIKDKKILVVDDHKELLKMIDEILRKEGFSRVFLASSYEEAVRVFRNVKPDCAILDVVLPDGDGFSIMRKIRETSKIP
VIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLVGILNRVYVPIEEEELPVFKLGDSVVVNLNSACVEKDGQEIS
LTAKEHSLLLKLYENKGRIVTNDSLCQAIWGDDMYGYENTLMVHVRRVREKIEKTPSTPKHLITVRGLGYKLMIN

Nucleotide

• Length: 708 bp

>NTDB_id=350074 E1H34_RS03760 WP_009888460.1 782383..783090(+) (scnR) [Clostridioides difficile strain Cd11]
ATGGAGTCAATAAAAGATAAAAAAATACTTGTGGTTGATGACCACAAGGAATTATTAAAAATGATAGATGAAATCCTGAG
AAAAGAGGGGTTTAGTAGAGTATTTTTAGCATCAAGTTATGAGGAAGCTGTTAGGGTATTTAGAAATGTAAAGCCAGATT
GTGCAATTTTAGATGTTGTATTGCCAGATGGAGATGGTTTTTCTATTATGAGAAAAATTAGAGAGACATCTAAAATACCA
GTGATTTTTCTCTCTGCAAGAGGTGAAGATGAAGATAGATTGATTGGTTTGGGCTTAGGGGCTGACGATTATATAGTAAA
GCCATTTTTACCAAAGGAACTTACTTTAAGGCTTGTGGGTATATTAAATCGTGTATATGTGCCTATAGAAGAAGAGGAGT
TGCCAGTATTTAAACTGGGAGATTCTGTTGTTGTGAATTTAAATAGTGCATGTGTTGAGAAAGATGGGCAAGAGATTTCT
TTAACAGCTAAAGAGCATTCGTTGCTTTTAAAGTTGTATGAAAATAAAGGGAGAATTGTTACTAATGATTCACTATGTCA
AGCCATTTGGGGAGATGATATGTATGGATATGAAAATACCCTTATGGTTCATGTTAGAAGGGTTAGAGAGAAGATAGAAA
AAACTCCATCTACACCTAAACATCTTATTACAGTAAGAGGTCTTGGATATAAGTTGATGATTAATTAA

Domains

Predicted by InterproScan.

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (156-232)

• Response regulator receiver domain (Response_reg) (9-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	48.918	98.298	0.481
micA	Streptococcus pneumoniae Cp1015	40	100	0.4
vicR	Streptococcus mutans UA159	38.362	98.723	0.379