Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   KRP1_RS30265 Genome accession   NZ_CP046069
Coordinates   6485531..6487606 (+) Length   691 a.a.
NCBI ID   WP_014603423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain KRP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6480531..6492606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRP1_RS30235 (KRP1_30300) - 6480953..6481333 (+) 381 WP_003096609.1 RidA family protein -
  KRP1_RS30240 (KRP1_30305) - 6481388..6482119 (+) 732 WP_003096611.1 hypothetical protein -
  KRP1_RS30245 (KRP1_30310) - 6482126..6482746 (-) 621 WP_003096613.1 LysE family translocator -
  KRP1_RS30250 (KRP1_30315) - 6482813..6483613 (-) 801 WP_014603422.1 AraC family transcriptional regulator -
  KRP1_RS30255 (KRP1_30320) - 6483613..6484464 (-) 852 WP_003121310.1 SDR family oxidoreductase -
  KRP1_RS30260 (KRP1_30325) oxyR 6484602..6485534 (+) 933 WP_003096622.1 oxidative stress transcriptional regulator OxyR -
  KRP1_RS30265 (KRP1_30330) recG 6485531..6487606 (+) 2076 WP_014603423.1 ATP-dependent DNA helicase RecG Machinery gene
  KRP1_RS30270 (KRP1_30335) - 6487696..6489105 (+) 1410 WP_003098324.1 HDOD domain-containing protein -
  KRP1_RS30275 (KRP1_30340) - 6489177..6489569 (-) 393 WP_023114990.1 hypothetical protein -
  KRP1_RS30280 (KRP1_30345) - 6489705..6489977 (-) 273 WP_003096630.1 HU family DNA-binding protein -
  KRP1_RS30285 (KRP1_30350) alkT 6490179..6491333 (-) 1155 WP_003117168.1 rubredoxin-NAD(+) reductase AlkT -
  KRP1_RS30290 (KRP1_30355) - 6491385..6491552 (-) 168 WP_003098329.1 rubredoxin -
  KRP1_RS30295 (KRP1_30360) - 6491736..6491903 (-) 168 WP_003098330.1 rubredoxin -
  KRP1_RS30300 (KRP1_30365) - 6492037..6492438 (-) 402 WP_003098332.1 heme-binding protein -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 76208.90 Da        Isoelectric Point: 7.2591

>NTDB_id=350055 KRP1_RS30265 WP_014603423.1 6485531..6487606(+) (recG) [Pseudomonas aeruginosa strain KRP1]
MTELSRVPVTALKGVGAALAEKLARVGLETLQDILFHLPLRYQDRTRVTAIGALRPGADAVVEGVVASADVVMGRRRSLL
VRLQDGSGTLSLRFYHFSQAQKDGLKRGTHLRCYGEVRPGASGLEIYHPEYRALNGDEPIPVEQTLTPIYPTTEGLTQQR
LRQLSQQALAMLGPSSLPDWLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQRLR
EAVRSQAAPRLPAASRLPKRFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDVGAGKTVVAALAALQAIEAGYQV
ALMAPTEILAEQHFLNFSKWLQPLDIEVAWLAGKLKGKARAAALERIGDGAPMVVGTHALFQDEVKFKRLALAIIDEQHR
FGVQQRLALRQKGVDGRLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAACRE
GRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAFKEGMLQLLVATTVIEVGVDVPNA
SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPLSQIGRERLGIMRETSDGFVIAEKDLELRGPGEMLGTRQTG
LLQFKVADLMRDADLLPAVRDAAQSLLAHWPQHVSPLLERWLRHGQQYGQV

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=350055 KRP1_RS30265 WP_014603423.1 6485531..6487606(+) (recG) [Pseudomonas aeruginosa strain KRP1]
ATGACCGAGCTGTCCAGGGTCCCGGTCACCGCGCTAAAGGGCGTAGGCGCCGCGCTGGCGGAGAAGCTCGCTCGGGTAGG
CCTGGAAACCCTGCAGGATATCCTGTTCCACCTGCCCCTGCGCTACCAGGACCGTACCCGCGTCACCGCCATCGGCGCCC
TGCGGCCAGGGGCCGACGCGGTGGTCGAGGGCGTGGTGGCCAGCGCCGACGTGGTGATGGGGCGCCGCCGCAGCCTGCTG
GTGCGCCTGCAGGACGGCAGCGGCACCCTGAGCCTGCGCTTCTACCATTTCAGCCAGGCGCAGAAGGACGGTCTCAAGCG
CGGCACCCACCTGCGCTGCTACGGCGAAGTCCGGCCGGGTGCCTCGGGCCTGGAGATCTACCATCCGGAATACCGCGCGC
TGAACGGCGACGAGCCGATTCCGGTGGAGCAGACCCTGACGCCGATCTACCCGACTACCGAGGGCCTCACCCAGCAGCGC
CTGCGCCAGTTGAGCCAACAGGCCCTGGCCATGCTCGGCCCCAGCAGCCTGCCCGACTGGCTGCCGGCGGAACTGGCCCG
CGACTACCAACTTGGCCCGCTCGACCAGGCGATCCGCTACCTGCACCGGCCGCCGCCGGATGCCGACATCGAGGAACTGG
CCGAAGGCCGGCACTGGGCGCAGTTGCGCCTGGCCTTCGAAGAACTGCTGACCCACCAGTTATCCCTGCAGCGCCTGCGC
GAAGCCGTGCGCTCGCAGGCAGCGCCGCGCTTGCCGGCGGCCAGCCGCTTGCCGAAACGCTTCCTTGCCAACCTCGGCTT
CCAGCCGACCGGCGCGCAACGCCGGGTCGGCGCGGAGATCGCCTACGACCTGGCCCAGGACGAGCCGATGCTGCGCCTGG
TGCAAGGCGACGTCGGTGCCGGCAAGACCGTGGTCGCCGCCCTCGCCGCCCTGCAAGCCATAGAGGCCGGCTACCAGGTG
GCGCTGATGGCGCCGACCGAGATCCTCGCCGAGCAGCATTTCCTCAACTTCAGCAAGTGGCTCCAGCCGCTGGACATCGA
AGTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGGCCCGCGCGGCGGCACTGGAACGCATCGGCGACGGCGCGCCGATGG
TGGTCGGCACCCACGCGCTGTTCCAGGATGAAGTGAAATTCAAGCGCCTTGCACTGGCGATCATCGACGAACAGCACCGC
TTCGGCGTGCAGCAGCGCCTGGCCCTGCGCCAGAAGGGCGTGGACGGCAGGCTCTGCCCACACCAGTTGATCATGACCGC
CACGCCGATCCCACGGACCCTGGCGATGAGCGCCTATGCCGACCTCGACACCTCGATCCTCGACGAGCTGCCGCCCGGGC
GTACCCCGGTGAATACCGTGCTGGTGGCCGACAGCCGCCGTATCGAGGTGATCGAGCGAGTCCGCGCGGCTTGCCGCGAA
GGGCGCCAGGCCTACTGGGTGTGTACCCTGATCGAAGAGTCCGAGGAGCTTACCTGCCAGGCCGCCGAGACCACCTACGA
AGAGCTTTCCTCGGCGCTGGGCGAACTGCGTGTCGGCCTGATCCACGGGCGCATGAAGCCGGCGGACAAGGCCGTGGTGA
TGGAGGCCTTCAAGGAAGGCATGTTGCAACTGCTGGTGGCGACCACGGTGATCGAGGTCGGCGTCGACGTGCCCAACGCC
AGCCTGATGATCATCGAGAACCCCGAGCGCCTTGGCCTGGCCCAACTGCACCAGTTGCGCGGCCGGGTTGGCCGGGGCAG
CGCCGCCAGCCACTGCGTGCTGCTCTACCACCCACCGCTGTCGCAGATCGGCCGCGAGCGGCTGGGCATCATGCGCGAAA
CCAGCGACGGCTTCGTCATCGCCGAGAAGGACCTGGAATTGCGCGGCCCCGGCGAAATGCTCGGCACCCGCCAAACCGGC
CTGCTGCAATTCAAGGTCGCCGACCTGATGCGCGACGCAGACCTGCTGCCGGCGGTCCGCGATGCCGCCCAATCCCTCCT
GGCGCACTGGCCGCAGCATGTCAGCCCGCTGCTCGAACGGTGGTTGCGCCACGGCCAGCAATACGGTCAAGTGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(293-430)

Helicase conserved C-terminal domain (Helicase_C)

(479-586)

RecG wedge domain (RecG_wedge)

(12-170)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.373

97.106

0.489
  recG/mmsA Streptococcus pneumoniae R6

41.018

96.671

0.397
  recG/mmsA Streptococcus pneumoniae R36A

41.018

96.671

0.397
  recG Bacillus subtilis subsp. subtilis str. 168

40.504

97.54

0.395