Detailed information NTG0349989

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: E1H41_RS03670
• Genome accession: NZ_CP037806
• Coordinates: 754538..755245 (+)
• Length: 235 a.a.
• NCBI ID: WP_009895700.1
• Uniprot ID: -
• Organism: Clostridioides difficile strain Cd18
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 749538..760245

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E1H41_RS03645 (E1H41_03765)	cdd1	750333..750578 (+)	246	WP_009888450.1	protein Cdd1	-
E1H41_RS03650 (E1H41_03770)	-	750796..751065 (-)	270	WP_003426848.1	DUF3795 domain-containing protein	-
E1H41_RS03655 (E1H41_03780)	-	751943..752680 (-)	738	WP_003439186.1	ABC transporter permease	-
E1H41_RS03660 (E1H41_03785)	-	752692..753453 (-)	762	WP_009895698.1	ABC transporter permease	-
E1H41_RS03665 (E1H41_03790)	-	753453..754376 (-)	924	WP_025985748.1	ABC transporter ATP-binding protein	-
E1H41_RS03670 (E1H41_03795)	scnR	754538..755245 (+)	708	WP_009895700.1	response regulator transcription factor	Regulator
E1H41_RS03675 (E1H41_03800)	-	755290..756696 (+)	1407	WP_009895701.1	sensor histidine kinase	-
E1H41_RS03680 (E1H41_03805)	-	758444..758833 (+)	390	WP_003426867.1	BlaI/MecI/CopY family transcriptional regulator	-
E1H41_RS03685 (E1H41_03810)	-	759700..760170 (+)	471	WP_009895702.1	VOC family protein	-

Sequence

Protein

• Length: 235 a.a.
• Molecular weight: 26702.18 Da
• Isoelectric Point: 6.1479

>NTDB_id=349989 E1H41_RS03670 WP_009895700.1 754538..755245(+) (scnR) [Clostridioides difficile strain Cd18]
MESIKDKKILVVDDHKELLKMIDEILRKEGFSRVFLASSYEEAVKVFRNVKPDCAILDVVLPDGDGFSIMRKIRETSKIP
VIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLVGILNRVYVPIEEEELPVFKLGDSVVVNLNSACVEKEGQEIS
LTAKEHSLLLKLYENKGRIVTNDSLCQAIWGDDMYGYENTLMVHVRRVREKIEKTPSTPKHLITVRGLGYKLMIN

Nucleotide

• Length: 708 bp

>NTDB_id=349989 E1H41_RS03670 WP_009895700.1 754538..755245(+) (scnR) [Clostridioides difficile strain Cd18]
ATGGAGTCAATAAAAGATAAAAAAATACTTGTGGTTGATGACCACAAGGAATTATTAAAAATGATAGATGAAATCCTGAG
AAAAGAGGGATTTAGTAGAGTATTTTTAGCATCAAGTTATGAGGAAGCTGTTAAGGTATTTAGAAATGTAAAGCCAGATT
GTGCAATTTTAGATGTTGTATTGCCAGATGGAGATGGTTTTTCTATTATGAGAAAAATTAGAGAGACATCTAAAATACCA
GTGATTTTTCTCTCTGCAAGAGGTGAAGATGAAGATAGATTGATTGGTTTGGGCTTAGGGGCTGACGATTATATAGTAAA
GCCATTTTTACCAAAGGAACTTACTTTAAGGCTTGTGGGTATATTAAATCGTGTATATGTGCCTATAGAAGAAGAGGAGT
TGCCAGTATTTAAACTGGGAGATTCTGTTGTTGTGAATTTAAATAGTGCATGTGTTGAGAAAGAAGGGCAAGAGATTTCT
TTAACAGCTAAAGAGCATTCGTTGCTTTTAAAGTTGTATGAAAATAAAGGGAGAATTGTTACTAATGATTCACTATGTCA
AGCCATTTGGGGAGATGATATGTATGGATATGAAAATACCCTTATGGTTCATGTTAGAAGGGTTAGAGAGAAGATAGAAA
AAACTCCATCTACACCTAAACATCTTATTACAGTAAGAGGTCTTGGATATAAGTTGATGATTAATTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-117)

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (156-232)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	48.918	98.298	0.481
micA	Streptococcus pneumoniae Cp1015	40	100	0.4
vicR	Streptococcus mutans UA159	38.362	98.723	0.379