Detailed information NTG0349677

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: E0Z08_RS01705
• Genome accession: NZ_CP037424
• Coordinates: 365406..366266 (-)
• Length: 286 a.a.
• NCBI ID: WP_058868793.1
• Uniprot ID: -
• Organism: Acinetobacter johnsonii strain M19
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 360406..371266

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E0Z08_RS01680 (E0Z08_01680)	recN	360565..362226 (-)	1662	WP_058868790.1	DNA repair protein RecN	-
E0Z08_RS01685 (E0Z08_01685)	-	362619..362942 (+)	324	WP_004692718.1	pyrimidine/purine nucleoside phosphorylase	-
E0Z08_RS01690 (E0Z08_01690)	rlmB	363085..363834 (+)	750	WP_004692717.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
E0Z08_RS01695 (E0Z08_01695)	-	363867..364784 (+)	918	WP_058868791.1	DMT family transporter	-
E0Z08_RS01700 (E0Z08_01700)	coaE	364798..365397 (-)	600	WP_058868792.1	dephospho-CoA kinase	-
E0Z08_RS01705 (E0Z08_01705)	pilD	365406..366266 (-)	861	WP_058868793.1	prepilin peptidase	Machinery gene
E0Z08_RS01710 (E0Z08_01710)	pilC	366266..367492 (-)	1227	WP_131229878.1	type II secretion system F family protein	Machinery gene
E0Z08_RS01715 (E0Z08_01715)	pilB	367523..369235 (-)	1713	WP_114392504.1	type IV-A pilus assembly ATPase PilB	Machinery gene
E0Z08_RS01720 (E0Z08_01720)	tpiA	369515..370306 (+)	792	WP_058868795.1	triose-phosphate isomerase	-
E0Z08_RS01725 (E0Z08_01725)	secG	370320..370649 (+)	330	WP_058868796.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32001.45 Da
• Isoelectric Point: 8.0564

>NTDB_id=349677 E0Z08_RS01705 WP_058868793.1 365406..366266(-) (pilD) [Acinetobacter johnsonii strain M19]
MQEIISYLINTPMALYFAVGVFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLLLHPEQPIIDETKLSLSKPASTCPQCKSA
IRWYQNVPVMSWLLLRGKCGTCHNPISIRYPAIELLTAICALVVVAVFGPTIQMLFGLVLTYILIALTFIDFDTQLLPDR
YTLTLAALGLGVNSYAIYTTPTMAIWGYIIGFLCLWIVYYLFKLITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSF
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGN

Nucleotide

• Length: 861 bp

>NTDB_id=349677 E0Z08_RS01705 WP_058868793.1 365406..366266(-) (pilD) [Acinetobacter johnsonii strain M19]
ATGCAAGAAATAATTTCCTATCTGATCAATACTCCAATGGCGCTTTATTTCGCCGTTGGAGTTTTTAGTTTGTGCATCGG
TAGTTTTCTAAATGTAGTGATCTATCGCACGCCAAAAATGATGGAACAAGAATGGCGCACCGACTGCCAACTTCTGCTTC
ATCCTGAACAGCCTATTATTGATGAAACGAAACTCTCGTTGAGCAAGCCTGCCTCGACCTGCCCCCAATGTAAAAGTGCC
ATACGCTGGTATCAAAATGTCCCTGTGATGAGTTGGTTACTGCTACGAGGAAAGTGTGGCACTTGCCATAACCCGATCAG
TATTCGCTACCCTGCGATTGAACTCCTGACCGCCATTTGCGCATTGGTCGTGGTTGCAGTCTTTGGCCCAACAATCCAAA
TGTTGTTTGGTCTCGTACTCACTTACATTTTAATCGCCTTAACTTTTATTGATTTTGACACTCAACTTTTACCTGATCGC
TATACCCTCACCCTTGCAGCTCTGGGTTTAGGGGTCAATAGTTATGCGATTTACACCACACCAACGATGGCTATTTGGGG
TTACATCATTGGCTTTTTATGCTTATGGATTGTCTACTATCTGTTTAAGCTCATCACAGGTAAGGAAGGTATGGGTTATG
GCGACTTTAAGTTACTTGCTGCTTTAGGCGCATGGATGGGCCCTTTGCTGCTGCCGCTGATTGTGCTACTTTCCTCTTTC
GTAGGTGCCATTATCGGCATCATTCTGCTCAAAGTGCGCAAAGAAAATCAGCCTTTTGCTTTTGGTCCATATATTGCCAT
CGCAGGTTGGATTGCCTTTCTGTGGGGTGAGCAAATTATGAAAATATATTTAGGCAATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	79.371	100	0.794
pilD	Acinetobacter baumannii D1279779	79.649	99.65	0.794
pilD	Vibrio cholerae strain A1552	53.558	93.357	0.5
pilD	Vibrio campbellii strain DS40M4	52.06	93.357	0.486
pilD	Neisseria gonorrhoeae MS11	45.421	95.455	0.434