Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   NMO_RS03715 Genome accession   NC_013016
Coordinates   720391..724005 (-) Length   1204 a.a.
NCBI ID   WP_015815404.1    Uniprot ID   C6S650
Organism   Neisseria meningitidis alpha14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 715391..729005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMO_RS03690 (NMO_0669) hemE 716481..717545 (+) 1065 WP_014581900.1 uroporphyrinogen decarboxylase -
  NMO_RS03695 (NMO_0670) radA 717734..719113 (+) 1380 WP_014581901.1 DNA repair protein RadA Machinery gene
  NMO_RS03700 (NMO_0671) - 719389..719868 (-) 480 WP_002222722.1 DUF302 domain-containing protein -
  NMO_RS03710 (NMO_0672) - 719993..720352 (-) 360 WP_015815403.1 rhodanese-like domain-containing protein -
  NMO_RS03715 (NMO_0673) recB 720391..724005 (-) 3615 WP_015815404.1 exodeoxyribonuclease V subunit beta Machinery gene
  NMO_RS03720 (NMO_0674) - 724238..725146 (-) 909 WP_002217584.1 Dyp-type peroxidase -
  NMO_RS03725 (NMO_0675) - 725431..726258 (+) 828 WP_079884524.1 amino acid ABC transporter substrate-binding protein -
  NMO_RS03730 (NMO_0676) - 726248..726964 (+) 717 WP_048816070.1 amino acid ABC transporter permease -
  NMO_RS03735 (NMO_0677) - 726974..727729 (+) 756 WP_002222716.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 1204 a.a.        Molecular weight: 134349.90 Da        Isoelectric Point: 5.8021

>NTDB_id=34965 NMO_RS03715 WP_015815404.1 720391..724005(-) (recB) [Neisseria meningitidis alpha14]
MSAPIQAFDPLTVPIAGTNLIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE
SKEIAELGDGALSDGIAAYCAEHHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLC
QAPFDVELTEEDGDRLLIPAQDFWRERVSNDPVLAALAFKRKAVPQTVLAQIRAYLSRPYLNFRRPQADLKQAQRNAETS
WQTVCRLLPELEAGFWRIHPDLNGNSYRKNSFGNLFKELAQKSAAGQLPFLDKDTHDRLLKLASDKLEAGLKKGKTPDAA
VFAELQKLADFGYDLNALEEAEEATIIRLQLDLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARTVAEN
WETALIDEFQDTDPLQYEIFQKIFIAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAEDARHRYTLATNYRSHAALIGSIG
ALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAGGRLNF
KGCPLQSGDIAVLVRTHNEAVMVSAALKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSSIFGYNA
QQLHDFNQNESEILHWAESARTALDNWNQYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAA
LHKWLRDQISLAGNNGGDNRSIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQ
LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNPLAYLIEGLPQDSRETVRRAYACEKDGIAMLKRNW
QRVADNAPSGTNFSFTEDAPPPAVYCGNAGQTAEFAASDIPKRGFRFIRHTSFTALSRQTQTPDGGEEDACPSLDAAETS
VAAMPSETPTASDGISIHNFPKGTQAGLCLHEILEDFKFGQAAAGQETLIADKLKKYGFEEIWLPAVAEMAEACRKTPLT
GAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDIRLPEVCRAAAETLDFHTVNGFLNGFADMVCQDPDGNICVI
DYKSNHLGADASAYTQQAMDEAVAHHHYYLQALIYAVAAMRYFKLRGQPPAAVSVRYLFLRGFDGKGGGVWRWDIDAAAL
EQIK

Nucleotide


Download         Length: 3615 bp        

>NTDB_id=34965 NMO_RS03715 WP_015815404.1 720391..724005(-) (recB) [Neisseria meningitidis alpha14]
ATGTCTGCACCCATCCAAGCATTCGACCCGCTAACCGTCCCCATTGCCGGCACCAACCTGATTGAGGCCTCTGCCGGCAC
CGGAAAAACCTACGGCATTGCCGCCCTGTTTACGCGCCTGATTGTATTGGAACAAAAAAACGTCGAGCGCGTATTGGTCG
TTACCTTCACCAAAGCCGCCACCGCCGAGCTGAAAACACGCCTGCGCGCGCGTTTGGACGATGTGTTGCAGGTTTTAGAA
AGCAAAGAAATTGCCGAACTTGGAGACGGCGCGCTTTCAGACGGCATCGCCGCCTATTGTGCGGAACACCACAAAGGCGA
CACCTTCCTGCCCGCACTCTTAAAACAGGCTTTGCAAAAAGAGGGCCGGACGCGTCTGATTGTCCGCCTCAAGGCCGCCA
TCGGGCAATTCGACAACGCCGCCATCTACACCATCCACGGCTTCTGCCAGCGCATCCTGCGCGACTACGCCTTCTTGTGC
CAAGCACCGTTCGATGTCGAACTGACCGAAGAAGACGGCGACCGCCTGCTTATCCCGGCGCAAGATTTTTGGCGGGAACG
CGTCAGCAATGATCCGGTGCTTGCCGCATTGGCGTTTAAACGCAAAGCTGTGCCGCAAACCGTCCTTGCCCAAATCCGCG
CCTACCTGTCCCGCCCGTACCTGAATTTCCGCCGTCCGCAGGCGGATTTGAAACAGGCGCAGCGCAACGCCGAAACCTCA
TGGCAAACCGTCTGCCGCCTGCTGCCCGAGCTGGAAGCCGGCTTTTGGCGCATCCATCCCGACCTCAACGGCAACAGTTA
CCGCAAAAACAGCTTCGGCAACCTTTTTAAAGAACTGGCACAAAAATCCGCCGCCGGACAACTGCCCTTTCTGGACAAAG
ACACGCACGACAGACTCTTGAAACTTGCGTCCGACAAACTCGAAGCCGGACTGAAAAAAGGCAAAACGCCCGATGCGGCA
GTATTTGCCGAATTGCAGAAACTGGCAGACTTCGGGTACGATTTGAACGCACTCGAAGAAGCGGAAGAAGCAACAATAAT
CCGGCTGCAACTGGATTTAATCGGATACCTCAACCGCAGCCTTGCCGAGATGAAAAAATCGCGCCGCGAACGCGGTTTCG
ACGACCTGCTGCTCGATGTCCACACCGCGCTGACCGACAATCCGCACGCCGAAACCCTCGCCCGCACCGTTGCCGAAAAC
TGGGAAACCGCGCTGATCGACGAGTTCCAAGACACCGACCCGCTGCAATACGAAATCTTCCAAAAAATCTTCATCGCCCA
AAACCGCCCGCTGTTTCTGGTCGGCGATCCCAAACAGGCGATTTACAGCTTTCGCGGAGCGGACATTTACGCCTACCTTC
AGGCGGCGGAAGACGCGCGGCACCGCTACACGCTCGCCACCAACTACCGCAGCCACGCCGCGCTTATCGGCAGCATAGGC
GCGCTGTTCCGCCTCAAAGAACGCCCGTTCGTTTTGGAAAACATCGGCTATTCGGAAGTCGGTGCGGCGCGTGCCGAAAG
CAGATTGTCGCCCAAACGTCCTGCCGTACAGGTTCGTTGGCTGCACGAAAACGACAATGAAAAAGCCAACAAAGACGTTT
TGCGCCGACGTGCCGCCGACTATTGCGCCGACGAAATCGCCCACGCGCTCAACGAAGCCGCCGGAGGCCGTCTGAATTTC
AAAGGCTGCCCGTTGCAGTCGGGCGATATTGCCGTGCTGGTACGCACGCACAACGAGGCGGTGATGGTTTCCGCCGCCCT
GAAAAAACGGCAGGTGCAAAGCGTCCTGCTTTCGCGCGAATCCGTGTTCGCCTCGCCCGAAGCCGCCGCCCTGTCCGCAC
TCATCGGCTTCTGGCTCGAACCGCGCCGCGCCGGAACGCTGCGCTTTGTCCTGACAAGCAGCATATTCGGCTATAACGCG
CAGCAATTGCACGACTTCAACCAAAACGAAAGCGAGATTTTGCATTGGGCGGAATCTGCCCGAACCGCGCTCGACAACTG
GAATCAATACGGCATTTTCGCCGCCATGCAGCAATTTTCCCAAACACACGGCATCGAAACGCGCCTCTTAAGCCGGAACA
ACGGGCGCAGCCTGACCAATTATTTCCAACTGCTCGAACTGCTTGCCGCCGAAGACGCGCAAAACCGCAACCCCGCCGCC
TTGCACAAGTGGCTGCGCGACCAAATCAGCCTGGCCGGTAACAACGGCGGCGACAACCGATCCATCCGTCTGGAAAGCGA
CGAAGATTTGGTCAAAATCGTTACTATGCACGCCTCGAAAGGTTTGCAGTATCCGCTGGTGTACTGCCCGTTTGCGTGGG
ACGCGCAAGATACCGGGCCGTCCGACTGGCAAATCCTCCACCAAAGCGCAAATCGAACCGAACTGTTGGCAAAGGCGCAA
CTGTCGGAAGACGAACAGAAGCAATACGCCGATGAGGAAATGGCGGAACGCCTGCGCCTGCTTTATGTCGCGCTGACGCG
TGCCGAGGAACAGCTCAACATCTACGCCGCCTATTCTTCCGATACCGCCGACAACCCCCTCGCCTACCTGATCGAAGGCT
TGCCGCAAGACAGCCGCGAAACCGTCCGCCGTGCCTATGCGTGTGAAAAAGACGGCATCGCGATGCTCAAACGCAACTGG
CAGCGCGTGGCGGACAACGCCCCTTCCGGCACAAATTTCTCCTTCACAGAAGATGCTCCGCCGCCTGCCGTATATTGCGG
CAACGCCGGTCAAACCGCCGAATTTGCCGCCTCCGACATTCCCAAGCGCGGTTTCCGCTTCATCCGCCACACCAGCTTCA
CCGCCTTAAGCCGCCAAACCCAAACGCCCGACGGCGGCGAAGAAGATGCCTGCCCGTCCTTGGATGCCGCCGAAACCTCG
GTAGCGGCGATGCCGTCTGAAACGCCGACGGCTTCAGACGGCATATCGATACACAACTTCCCGAAAGGCACGCAGGCGGG
GCTGTGCCTGCACGAAATTCTTGAAGATTTCAAATTCGGACAAGCAGCCGCCGGACAGGAAACCCTCATTGCCGACAAGC
TGAAAAAATACGGTTTTGAAGAAATATGGCTGCCCGCCGTTGCCGAAATGGCGGAAGCCTGCCGCAAAACGCCGCTGACG
GGGGCATACTGCCTGTCCGACATCCCGCCCGAGTGCCGCTGTCCCGAAATGGGCTTTACCCTCCACACCGAAGACTTCGG
CCTCAAACGGCTGCGCGACTGGTTTGCCCGCGACGACATCAGGCTGCCCGAAGTCTGCCGTGCCGCCGCCGAAACGCTCG
ACTTCCACACCGTCAACGGCTTTTTAAACGGCTTTGCCGATATGGTCTGCCAAGACCCCGACGGCAATATCTGCGTCATC
GACTACAAGTCGAACCACCTCGGCGCGGACGCATCCGCCTACACGCAACAGGCAATGGACGAAGCCGTCGCACACCACCA
CTATTACCTTCAAGCACTGATTTACGCCGTTGCCGCCATGCGCTACTTCAAACTGCGCGGACAACCGCCCGCCGCCGTTT
CCGTCCGCTACCTGTTTTTGCGCGGATTCGATGGCAAAGGCGGCGGCGTTTGGCGTTGGGACATAGATGCCGCCGCTTTG
GAACAGATAAAATAA

Domains

Predicted by InterproScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-458)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1069-1181)

UvrD-like helicase C-terminal domain (UvrD_C)

(463-651)

UvrD-like helicase C-terminal domain (UvrD_C)

(743-835)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C6S650

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

94.103

100

0.941

Multiple sequence alignment