Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NMO_RS03695 Genome accession   NC_013016
Coordinates   717734..719113 (+) Length   459 a.a.
NCBI ID   WP_014581901.1    Uniprot ID   -
Organism   Neisseria meningitidis alpha14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 712734..724113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMO_RS03675 (NMO_0666) - 713109..713870 (+) 762 WP_002223909.1 uroporphyrinogen-III synthase -
  NMO_RS03680 (NMO_0667) - 713885..715192 (+) 1308 WP_015815402.1 uroporphyrinogen-III C-methyltransferase -
  NMO_RS03685 (NMO_0668) - 715189..716406 (+) 1218 WP_014581899.1 heme biosynthesis protein HemY -
  NMO_RS03690 (NMO_0669) hemE 716481..717545 (+) 1065 WP_014581900.1 uroporphyrinogen decarboxylase -
  NMO_RS03695 (NMO_0670) radA 717734..719113 (+) 1380 WP_014581901.1 DNA repair protein RadA Machinery gene
  NMO_RS03700 (NMO_0671) - 719389..719868 (-) 480 WP_002222722.1 DUF302 domain-containing protein -
  NMO_RS03710 (NMO_0672) - 719993..720352 (-) 360 WP_015815403.1 rhodanese-like domain-containing protein -
  NMO_RS03715 (NMO_0673) recB 720391..724005 (-) 3615 WP_015815404.1 exodeoxyribonuclease V subunit beta Machinery gene

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49623.11 Da        Isoelectric Point: 7.3293

>NTDB_id=34964 NMO_RS03695 WP_014581901.1 717734..719113(+) (radA) [Neisseria meningitidis alpha14]
MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSSVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTITKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDICRDSRE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=34964 NMO_RS03695 WP_014581901.1 717734..719113(+) (radA) [Neisseria meningitidis alpha14]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACCGAATGCGGCGGCACTTCCCCGAAATGGCAGGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACACTTCAGGAAAGCTTGGCCGCGCCCGAGCCGAAAAACGCCCGCTTCCAATCTTGGGCGGCGG
ATACCTCGACCGTCCAATCCCTCTCCTCCGTGACCGCCACCGAAGTGCCGCGCAATCCGACCGGCATGGGCGAACTCGAC
CGCGTATTGGGCGGTGGTTTGGTCGATGGTGCGGTCATCCTGCTCGGCGGCGACCCCGGCATCGGCAAATCCACGCTGCT
GTTGCAAACCATCACCAAAATGGCACAAAGCCGCAAAGTGCTGTACGTTTCCGGTGAAGAATCCGCCCAACAAGTCGCCT
TGCGTGCGCAACGTTTGGAACTGCCCACAGAAGGCGTGAACCTGCTTGCCGAAATCCGCATGGAAGCGATTCAGACGGCC
TTGAAACAACACCAGCCCGAAGTCGTGGTTATCGATTCCATCCAAACCATGTATTCCGACCAAATCACTTCCGCCCCCGG
CTCCGTGTCGCAGGTGCGCGAATGTGCCGCCCAACTGACGCGCATGGCGAAACAAATGGGCATCGCCATGATACTGGTCG
GACACGTGACCAAAGACGGCGCGATTGCCGGCCCGCGCGTATTGGAGCATATGGTCGATACCGTGCTGTATTTCGAGGGC
GACCAGCATTCTAATTATCGAATGATACGCGCCATCAAAAACCGTTTCGGCGCGGCAAACGAATTGGGCGTGTTCGCTAT
GACCGAAAACGGTTTGAAAGGCGTGTCCAACCCGTCCGCCATCTTCCTTGCCAGCTACCGCGACGACACGCCCGGCTCGT
GCGTTTTGGTCACGCAGGAAGGCAGCCGCCCGCTTTTGGTCGAAATTCAGGCATTGGTCGATGACGCGCACGGCTTTACG
CCCAAACGCCTCACCGTCGGACTGGAACAAAACCGCCTCGCGATGCTGCTTGCCGTATTAAACCGACACGGCGGCATCGC
CTGTTTCGATCAGGATGTGTTCCTCAACGCCGTCGGCGGCGTGAAAATCGGCGAACCGGCGGCGGATTTGGCGGTCATCC
TCGCGATGCTTTCCAGCTTCCGCAACCGCCCTATGCCTGAAAAAACCGTGGTTTTCGGCGAAATCGGCTTAAGCGGCGAA
GTCCGCCCCGTCGCACGCGGGCAAGAGCGGCTCAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTCCCCAAAGC
CAATATGCCGCGCAACGCCAAAGAGTTTCCGAACCTGAAAATCTACGGCGTTTCGAGTTTGCAGGAAGCCATCGATATTT
GCCGCGACAGCAGGGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(80-220)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.11

99.129

0.497
  radA Streptococcus mitis NCTC 12261

47.894

98.257

0.471
  radA Streptococcus pneumoniae Rx1

47.566

98.475

0.468
  radA Streptococcus pneumoniae D39

47.566

98.475

0.468
  radA Streptococcus pneumoniae R6

47.566

98.475

0.468
  radA Streptococcus pneumoniae TIGR4

47.566

98.475

0.468
  radA Streptococcus mitis SK321

47.45

98.257

0.466

Multiple sequence alignment