Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   GJD96_RS01815 Genome accession   NZ_CP046009
Coordinates   34483..35073 (+) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain 1919D62     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 29483..40073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD96_RS01790 (GJD96_01790) emrD 29965..31149 (-) 1185 WP_000828746.1 multidrug efflux MFS transporter EmrD -
  GJD96_RS24035 ysdE 31231..31305 (+) 75 WP_211180519.1 protein YsdE -
  GJD96_RS01795 (GJD96_01795) tisB 31568..31657 (-) 90 WP_000060506.1 type I toxin-antitoxin system toxin TisB -
  GJD96_RS01800 (GJD96_01800) ivbL 32222..32320 (+) 99 WP_001300753.1 ilvB operon leader peptide IvbL -
  GJD96_RS01805 (GJD96_01805) ilvB 32426..34114 (+) 1689 WP_154166903.1 acetolactate synthase large subunit -
  GJD96_RS01810 (GJD96_01810) ilvN 34118..34408 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  GJD96_RS01815 (GJD96_01815) letA 34483..35073 (+) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  GJD96_RS01820 (GJD96_01820) uhpB 35073..36575 (+) 1503 WP_001295243.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  GJD96_RS01825 (GJD96_01825) uhpC 36585..37904 (+) 1320 WP_000936566.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  GJD96_RS01830 (GJD96_01830) uhpT 38042..39433 (+) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=349503 GJD96_RS01815 WP_000633668.1 34483..35073(+) (letA) [Escherichia coli strain 1919D62]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=349503 GJD96_RS01815 WP_000633668.1 34483..35073(+) (letA) [Escherichia coli strain 1919D62]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACGATTATGCTCTCCGTT
CACGACAGTCCTGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCACGCGGCTTTCTTTCCAAACGCTGTAGTCCGGATGA
ACTCATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GTCAGGACCCGCTAACCAAACGTGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTAGA
GCTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378

Multiple sequence alignment