Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   GJD95_RS07170 Genome accession   NZ_CP046006
Coordinates   1146614..1147351 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 1919D3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1141614..1152351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD95_RS07140 (GJD95_07140) yfiL 1141772..1142137 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  GJD95_RS07145 (GJD95_07145) aroF 1142347..1143417 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  GJD95_RS07150 (GJD95_07150) tyrA 1143428..1144549 (+) 1122 WP_000225202.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  GJD95_RS07155 (GJD95_07155) pheA 1144592..1145752 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  GJD95_RS07160 (GJD95_07160) pheL 1145851..1145898 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  GJD95_RS07165 (GJD95_07165) raiA 1146002..1146343 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  GJD95_RS07170 (GJD95_07170) comL 1146614..1147351 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  GJD95_RS07175 (GJD95_07175) rluD 1147486..1148466 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  GJD95_RS07180 (GJD95_07180) yfiH 1148463..1149194 (+) 732 WP_000040149.1 purine nucleoside phosphorylase YfiH -
  GJD95_RS07185 (GJD95_07185) clpC 1149324..1151897 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=349446 GJD95_RS07170 WP_000197686.1 1146614..1147351(-) (comL) [Escherichia coli strain 1919D3]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=349446 GJD95_RS07170 WP_000197686.1 1146614..1147351(-) (comL) [Escherichia coli strain 1919D3]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGAGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment