Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   GJD95_RS05170 Genome accession   NZ_CP046006
Coordinates   723901..724560 (-) Length   219 a.a.
NCBI ID   WP_001221502.1    Uniprot ID   B7LGG8
Organism   Escherichia coli strain 1919D3     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 718901..729560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD95_RS05145 (GJD95_05145) parE 718992..720884 (+) 1893 WP_000195296.1 DNA topoisomerase IV subunit B -
  GJD95_RS05150 (GJD95_05150) ygiN 720932..721246 (-) 315 WP_000958598.1 putative quinol monooxygenase -
  GJD95_RS05155 (GJD95_05155) mdaB 721277..721858 (-) 582 WP_000065430.1 NADPH:quinone oxidoreductase MdaB -
  GJD95_RS05160 (GJD95_05160) ygiZ 722177..722509 (+) 333 WP_000912120.1 DUF2645 family protein -
  GJD95_RS05165 (GJD95_05165) qseC 722555..723904 (-) 1350 WP_000673355.1 quorum sensing histidine kinase QseC -
  GJD95_RS05170 (GJD95_05170) ciaR 723901..724560 (-) 660 WP_001221502.1 quorum sensing response regulator transcription factor QseB Regulator
  GJD95_RS05175 (GJD95_05175) ygiW 724712..725104 (+) 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
  GJD95_RS05180 (GJD95_05180) ygiV 725157..725639 (+) 483 WP_000183494.1 GyrI-like domain-containing protein -
  GJD95_RS05185 (GJD95_05185) mqsR 725844..726140 (+) 297 WP_000415584.1 type II toxin-antitoxin system toxin MqsR -
  GJD95_RS05190 (GJD95_05190) mqsA 726142..726537 (+) 396 WP_000650107.1 type II toxin-antitoxin system antitoxin MqsA -
  GJD95_RS05195 (GJD95_05195) ygiS 726670..728277 (+) 1608 WP_001295629.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24745.66 Da        Isoelectric Point: 6.6543

>NTDB_id=349435 GJD95_RS05170 WP_001221502.1 723901..724560(-) (ciaR) [Escherichia coli strain 1919D3]
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=349435 GJD95_RS05170 WP_001221502.1 723901..724560(-) (ciaR) [Escherichia coli strain 1919D3]
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTTTATAGCGCGCCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGCTGGAGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7LGG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.326

100

0.397
  ciaR Streptococcus pneumoniae D39

38.326

100

0.397
  ciaR Streptococcus pneumoniae R6

38.326

100

0.397
  ciaR Streptococcus pneumoniae TIGR4

38.326

100

0.397
  ciaR Streptococcus mutans UA159

35.874

100

0.365

Multiple sequence alignment