Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EZY40_RS07010 Genome accession   NZ_CP036530
Coordinates   1417911..1418402 (-) Length   163 a.a.
NCBI ID   WP_156247250.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain STAB09023     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1412911..1423402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZY40_RS06995 (EZY40_07115) - 1415642..1416586 (+) 945 WP_002983147.1 magnesium transporter CorA family protein -
  EZY40_RS07000 (EZY40_07120) - 1416718..1417374 (+) 657 WP_156247248.1 DUF1129 domain-containing protein -
  EZY40_RS07005 (EZY40_07125) rpsR 1417507..1417746 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  EZY40_RS07010 (EZY40_07130) ssbA 1417911..1418402 (-) 492 WP_156247250.1 single-stranded DNA-binding protein Machinery gene
  EZY40_RS07015 (EZY40_07135) rpsF 1418424..1418714 (-) 291 WP_031488703.1 30S ribosomal protein S6 -
  EZY40_RS07020 (EZY40_07140) - 1418887..1419180 (-) 294 WP_002983113.1 hypothetical protein -
  EZY40_RS07025 (EZY40_07145) mutY 1419348..1420502 (+) 1155 WP_162489831.1 A/G-specific adenine glycosylase -
  EZY40_RS07030 (EZY40_07150) - 1420679..1421266 (+) 588 WP_031488701.1 helix-turn-helix domain-containing protein -
  EZY40_RS07035 (EZY40_07155) trxA 1421318..1421650 (-) 333 WP_256363924.1 thioredoxin -
  EZY40_RS07040 (EZY40_07160) - 1421713..1422213 (-) 501 WP_021299043.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17967.73 Da        Isoelectric Point: 4.8778

>NTDB_id=349427 EZY40_RS07010 WP_156247250.1 1417911..1418402(-) (ssbA) [Streptococcus pyogenes strain STAB09023]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGERDADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=349427 EZY40_RS07010 WP_156247250.1 1417911..1418402(-) (ssbA) [Streptococcus pyogenes strain STAB09023]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGATGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTATTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.626
  ssb Latilactobacillus sakei subsp. sakei 23K

59.302

100

0.626
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368

Multiple sequence alignment