Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   EZZ81_RS19020 Genome accession   NZ_CP036495
Coordinates   4276072..4278288 (-) Length   738 a.a.
NCBI ID   WP_029241212.1    Uniprot ID   A0AA46VYF9
Organism   Pseudomonas viridiflava strain Psy35     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4271072..4283288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZZ81_RS18990 (EZZ81_19245) murB 4271882..4272901 (-) 1020 WP_029241214.1 UDP-N-acetylmuramate dehydrogenase -
  EZZ81_RS18995 (EZZ81_19250) kdsB 4272936..4273700 (-) 765 WP_029241213.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  EZZ81_RS19000 (EZZ81_19255) - 4273697..4273882 (-) 186 WP_004884599.1 Trm112 family protein -
  EZZ81_RS19005 (EZZ81_19260) lpxK 4273900..4274895 (-) 996 WP_004884600.1 tetraacyldisaccharide 4'-kinase -
  EZZ81_RS19010 (EZZ81_19265) - 4274895..4275326 (-) 432 WP_004884601.1 biopolymer transporter ExbD -
  EZZ81_RS19015 (EZZ81_19270) exbB 4275323..4276039 (-) 717 WP_074454496.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  EZZ81_RS19020 (EZZ81_19275) comA 4276072..4278288 (-) 2217 WP_029241212.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EZZ81_RS19025 (EZZ81_19280) - 4278518..4278763 (+) 246 WP_029241211.1 hypothetical protein -
  EZZ81_RS19030 (EZZ81_19285) - 4278880..4279783 (+) 904 Protein_3762 DUF6708 domain-containing protein -
  EZZ81_RS19035 (EZZ81_19290) - 4280020..4280910 (+) 891 WP_122755463.1 DUF6708 domain-containing protein -
  EZZ81_RS19040 (EZZ81_19295) - 4280956..4281744 (-) 789 WP_004884611.1 ABC transporter permease -
  EZZ81_RS19045 (EZZ81_19300) - 4281741..4282673 (-) 933 WP_004884614.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80226.36 Da        Isoelectric Point: 9.9615

>NTDB_id=349150 EZZ81_RS19020 WP_029241212.1 4276072..4278288(-) (comA) [Pseudomonas viridiflava strain Psy35]
MRTGMIALALGLLALRFLPALPDTWLLLLMPVVALMLLPFRTYPLAFFLFGFTWACVSAQSALDNRLLSRLDGQTLWLQG
KVVGLPSAAEGVVRFELADGVSRRAKLPRLMRIAWYGGPEVRSGERWRLAVKLKRPGGLVNPEAFDYESWLLAQRIGATG
TVVDGQLLAPARAAWRDAIRQRLLAVDAQGREGGLAALVLGDGSGLSTTDWQVLQDTGTVHLLVISGQHISLLAGVIYAL
VSLLARSGLWPRTLPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVGLVLLWRLRFRHLGMTWPLLLSLNAVLVFEPL
VSLQPGFWLSFSAVGILILIFSGRLGAWSWVQSWTRAQWLIAVGLLPILMMLNLPISISGPLANLLAVPWVSVIVLPAAL
IGTLLLPVPIVGEGLLWLAGGALEGLFVFLGWMADLVPAWLPSTTPAWTLILSLLGALLLLLPRGVPMRPLGWPLLLLCV
FPPLKSVPAGQVDVLQLDVGQGLSILLRTRHHTLLYDTGPRFGEFDIGQRVVVPAIRKSGVRHLDVMLLSHADSDHAGGA
PAVHKAFTVGRVLGGDIERLAPALGALRCENGEQWEWDGVVFSTWIWEQAPEGNAGSCMLSVDAGGERLLLTGDVDAEAE
QAAIDSGFDLRAQWLQAPHHGSRSSSSKPFLRAVMPKGVLISRGRNNAFGHPHPLVMARYKWNGIASYDSAELGAIRLRL
GTYGSPEAQRAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=349150 EZZ81_RS19020 WP_029241212.1 4276072..4278288(-) (comA) [Pseudomonas viridiflava strain Psy35]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGCCTGTTGGCCCTGCGCTTCCTGCCTGCCTTGCCCGATACCTGGCTGTT
GCTGCTGATGCCCGTCGTGGCGTTGATGCTGCTGCCGTTTCGCACCTATCCGCTGGCCTTCTTTCTGTTCGGCTTCACCT
GGGCTTGCGTCTCGGCGCAATCGGCACTGGATAATCGATTGCTGTCCCGGCTCGACGGCCAGACGCTTTGGCTGCAGGGC
AAGGTGGTCGGGTTGCCGAGTGCGGCTGAGGGGGTGGTGCGTTTCGAGCTCGCGGATGGTGTGTCACGACGGGCGAAATT
ACCCCGGCTGATGCGCATTGCCTGGTATGGCGGTCCTGAAGTGCGCAGCGGTGAGCGATGGCGACTGGCGGTGAAGCTCA
AGCGGCCGGGTGGGCTGGTCAATCCCGAAGCGTTCGATTACGAATCATGGTTACTGGCCCAGCGTATCGGCGCGACCGGC
ACCGTGGTGGACGGTCAGTTGCTGGCACCGGCGCGTGCCGCCTGGCGCGATGCCATTCGCCAACGGCTGCTGGCCGTCGA
CGCGCAGGGGCGCGAAGGCGGGCTGGCAGCGCTGGTGCTTGGGGATGGCTCGGGCTTGTCGACCACTGACTGGCAAGTGC
TGCAGGACACCGGCACGGTGCATTTACTGGTGATCTCCGGTCAGCACATCAGTCTGCTGGCTGGAGTGATTTATGCGCTG
GTGAGTCTGCTGGCACGCTCGGGGCTATGGCCGCGAACATTGCCGTGGCTGCCCTGGGCGTGCGGTCTGGCGTTCGCGTC
GGCGCTGGGTTATGGGTTGCTGGCCGGGTTCGACGTGCCGGTGCGCCGTGCCTGTGTGATGGTGGGGCTGGTTCTGCTCT
GGCGTTTGCGCTTTCGGCATCTGGGCATGACTTGGCCTTTATTGCTGTCGCTCAACGCCGTCCTGGTGTTCGAGCCGCTG
GTGAGTCTGCAGCCGGGGTTCTGGCTGTCGTTCTCGGCAGTCGGGATTCTGATCCTGATCTTTAGCGGCCGCCTCGGTGC
CTGGAGCTGGGTGCAGAGCTGGACGAGAGCCCAGTGGCTGATCGCAGTCGGCCTGCTGCCTATTCTAATGATGTTGAACC
TGCCGATCAGTATCAGCGGTCCGCTTGCCAATTTGCTGGCTGTGCCCTGGGTCAGCGTCATCGTTCTGCCTGCCGCATTG
ATTGGCACGCTGTTATTGCCCGTTCCGATCGTGGGCGAAGGTCTGTTGTGGCTGGCTGGTGGAGCGCTGGAAGGGCTGTT
CGTGTTTCTGGGCTGGATGGCGGACCTCGTGCCTGCCTGGCTGCCCAGTACCACGCCGGCCTGGACTCTGATCCTGAGTC
TGCTGGGCGCGTTGCTGCTCCTGCTGCCCAGAGGTGTGCCGATGCGGCCTCTGGGCTGGCCGCTGCTGTTGCTGTGCGTG
TTTCCACCACTCAAGTCGGTGCCCGCCGGACAGGTTGACGTTCTACAACTGGATGTCGGGCAGGGTCTGTCGATTCTGTT
GCGCACCCGACACCACACCCTGCTGTATGACACCGGGCCGCGTTTCGGTGAGTTCGATATCGGTCAGCGGGTGGTCGTGC
CGGCCATTCGCAAGAGTGGGGTACGGCATCTGGACGTGATGCTGCTCAGTCACGCAGATTCCGATCATGCCGGAGGTGCA
CCGGCAGTCCACAAGGCGTTTACGGTCGGGCGTGTGCTGGGCGGAGATATCGAGCGCCTTGCGCCTGCACTCGGGGCACT
TCGTTGTGAAAACGGTGAGCAGTGGGAGTGGGACGGCGTGGTGTTTTCAACCTGGATCTGGGAGCAGGCACCCGAAGGCA
ACGCAGGGTCCTGCATGTTGAGTGTCGACGCCGGTGGCGAGCGATTGCTGCTGACCGGTGATGTCGATGCCGAGGCCGAA
CAGGCTGCCATAGACAGCGGATTCGACCTGCGCGCCCAGTGGCTGCAGGCACCGCACCACGGCAGCCGGTCCTCTTCCTC
GAAACCGTTTCTGAGAGCGGTCATGCCGAAAGGTGTGCTGATTTCCCGCGGACGCAACAATGCGTTCGGCCACCCACACC
CGCTGGTCATGGCGCGCTATAAATGGAACGGTATCGCCAGCTACGACAGTGCCGAGCTGGGTGCCATCCGTCTGAGACTG
GGTACTTACGGCAGCCCTGAGGCACAGCGCGCGCAGCGACGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.732

97.019

0.599
  comA Ralstonia pseudosolanacearum GMI1000

32.588

100

0.375

Multiple sequence alignment