Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   EZZ81_RS19015 Genome accession   NZ_CP036495
Coordinates   4275323..4276039 (-) Length   238 a.a.
NCBI ID   WP_074454496.1    Uniprot ID   A0AA46VYE7
Organism   Pseudomonas viridiflava strain Psy35     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4270323..4281039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZZ81_RS18990 (EZZ81_19245) murB 4271882..4272901 (-) 1020 WP_029241214.1 UDP-N-acetylmuramate dehydrogenase -
  EZZ81_RS18995 (EZZ81_19250) kdsB 4272936..4273700 (-) 765 WP_029241213.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  EZZ81_RS19000 (EZZ81_19255) - 4273697..4273882 (-) 186 WP_004884599.1 Trm112 family protein -
  EZZ81_RS19005 (EZZ81_19260) lpxK 4273900..4274895 (-) 996 WP_004884600.1 tetraacyldisaccharide 4'-kinase -
  EZZ81_RS19010 (EZZ81_19265) - 4274895..4275326 (-) 432 WP_004884601.1 biopolymer transporter ExbD -
  EZZ81_RS19015 (EZZ81_19270) exbB 4275323..4276039 (-) 717 WP_074454496.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  EZZ81_RS19020 (EZZ81_19275) comA 4276072..4278288 (-) 2217 WP_029241212.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EZZ81_RS19025 (EZZ81_19280) - 4278518..4278763 (+) 246 WP_029241211.1 hypothetical protein -
  EZZ81_RS19030 (EZZ81_19285) - 4278880..4279783 (+) 904 Protein_3762 DUF6708 domain-containing protein -
  EZZ81_RS19035 (EZZ81_19290) - 4280020..4280910 (+) 891 WP_122755463.1 DUF6708 domain-containing protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25834.42 Da        Isoelectric Point: 9.1401

>NTDB_id=349149 EZZ81_RS19015 WP_074454496.1 4275323..4276039(-) (exbB) [Pseudomonas viridiflava strain Psy35]
MIEWRQFFKGVVTVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQDQKLDKEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKVDLKSLAKAGGSKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=349149 EZZ81_RS19015 WP_074454496.1 4275323..4276039(-) (exbB) [Pseudomonas viridiflava strain Psy35]
ATGATAGAGTGGCGCCAATTTTTCAAGGGAGTGGTCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGTTGCC
GATCATTTTGAGTTCCATCGCCGCTGCCGGCATCATCATCGAACGGCTCTGGACGCTTCGCGCCAGCCGTATCACGCCGC
CGCACCTGCTGGGTCAGGTCTGGCAGTGGATTCAGGATCAGAAACTCGATAAAGAGAAGCTCAAGCAACTGCGCGCCGAT
TCGCCGCTGGGTGAAATCCTTGCGGCAGGCCTGGCCAACTCCAGGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGA
AGCCGCAGCGCGGGTCATTCATGACCTGGAGCGTTACCTGAGTGCGCTGGGTTCGATTGCTGCGATGGCGCCGTTGCTGG
GTTTGTTGGGCACCGTGCTGGGCATGATCGATATCTTCGGATCTTTCAACAGCTCTGGAGCCACGGCCAACGCCGGTGTT
CTCGCGGGCGGTATTTCCAAGGCGCTGATCTGTACCGCGTCGGGCCTGATCGTGGCCATTCCGGCCATCTTCTTTCACCG
TTTTCTGCAAAGCCGTGTCGATGAGTTGGTGGTCGGCATGGAGCAGCAGGCCATTCGTCTGGTTGAGGTGGTGCAGGGCG
ACCGTGACGTCGATCTGATTGACGCCAAGGTCGACCTCAAGTCCCTGGCCAAGGCAGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

88.235

0.697

Multiple sequence alignment