Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   EYF70_RS23805 Genome accession   NZ_CP036401
Coordinates   5748390..5749460 (+) Length   356 a.a.
NCBI ID   WP_131147608.1    Uniprot ID   A0A411X3E5
Organism   Pseudoduganella albidiflava strain DSM 17472     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5743390..5754460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYF70_RS23790 (EYF70_23790) - 5745084..5746058 (+) 975 WP_131147605.1 TauD/TfdA family dioxygenase -
  EYF70_RS23795 (EYF70_23795) - 5746101..5747018 (+) 918 WP_131147606.1 AEC family transporter -
  EYF70_RS23800 (EYF70_23800) - 5747243..5748181 (+) 939 WP_165497782.1 MerR family transcriptional regulator -
  EYF70_RS23805 (EYF70_23805) pilA 5748390..5749460 (+) 1071 WP_131147608.1 signal recognition particle-docking protein FtsY Machinery gene
  EYF70_RS23810 (EYF70_23810) - 5749486..5750145 (+) 660 WP_131147609.1 cell division ATP-binding protein FtsE -
  EYF70_RS23815 (EYF70_23815) ftsX 5750142..5751056 (+) 915 WP_131147610.1 permease-like cell division protein FtsX -
  EYF70_RS23820 (EYF70_23820) rpoH 5751540..5752439 (+) 900 WP_131147611.1 RNA polymerase sigma factor RpoH -
  EYF70_RS23825 (EYF70_23825) - 5752716..5753198 (+) 483 WP_131147612.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37844.80 Da        Isoelectric Point: 6.3611

>NTDB_id=348785 EYF70_RS23805 WP_131147608.1 5748390..5749460(+) (pilA) [Pseudoduganella albidiflava strain DSM 17472]
MFSFFKKKTVTPDVPPVAPADLAPIPAPAAPASNPAPAAVADAVPLAFDVETAPRPESKQSWMNRLKAGLSKTSANLSLL
FVGARIDDDLYDELEAALLMSDAGIDATEYLLDALKRKVKDDKLTDAAAVKVALKALMVDLLRPLEKPFVLGRHQPTVMM
ISGVNGAGKTTTIGKLAKHMQAHGQSVLLAAGDTFRAAAREQLMIWGQRNNVTVVSQESGDPAAVSYDAVQSGKAKGTNV
VMIDTAGRLPTQLHLMNELQKIKRVIGKGMDQAPHETLLVIDGNTGQNALTQVKAFDDALQLTGLIITKLDGTAKGGVLA
AIARVRPVPVYFIGIGEKIEDLQPFDAEEFVEALLG

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=348785 EYF70_RS23805 WP_131147608.1 5748390..5749460(+) (pilA) [Pseudoduganella albidiflava strain DSM 17472]
ATGTTCAGCTTCTTCAAGAAAAAAACCGTCACGCCCGACGTGCCGCCGGTCGCACCTGCGGACCTGGCGCCGATCCCGGC
TCCCGCTGCCCCTGCTTCGAATCCCGCGCCGGCCGCCGTTGCCGATGCGGTTCCTCTGGCTTTCGACGTTGAAACCGCGC
CGCGCCCCGAATCGAAACAATCCTGGATGAACCGGCTCAAGGCCGGCCTGTCGAAAACCTCCGCCAACCTGTCGCTGCTG
TTCGTCGGCGCCCGCATCGACGACGACCTGTATGACGAACTGGAGGCGGCGCTGCTGATGTCCGATGCCGGCATCGACGC
CACCGAATACCTGCTCGATGCGCTCAAGCGCAAGGTCAAGGACGACAAACTGACCGATGCGGCCGCCGTCAAGGTGGCGC
TGAAGGCCTTGATGGTCGACCTGCTGCGGCCCCTTGAAAAACCCTTCGTGCTGGGCCGGCACCAGCCGACCGTGATGATG
ATTTCCGGCGTCAACGGCGCCGGCAAGACCACCACGATCGGCAAGCTCGCCAAGCACATGCAGGCGCACGGCCAGTCCGT
GCTGCTGGCCGCCGGCGACACGTTCCGCGCCGCGGCCCGCGAGCAGCTGATGATCTGGGGCCAGCGCAACAACGTGACGG
TGGTGTCGCAGGAATCGGGCGACCCGGCCGCCGTGTCGTACGACGCGGTACAGTCCGGCAAGGCGAAGGGCACCAATGTC
GTCATGATCGACACGGCTGGCCGCCTGCCGACGCAGCTGCACCTGATGAACGAGCTGCAGAAGATCAAGCGCGTGATCGG
CAAGGGCATGGACCAGGCGCCGCACGAAACGCTGCTCGTCATCGACGGCAACACGGGCCAGAACGCGCTGACCCAGGTGA
AGGCGTTCGACGATGCGCTGCAGCTTACCGGCCTGATCATCACCAAGCTGGACGGCACCGCCAAGGGCGGCGTGCTGGCC
GCGATCGCGCGGGTGCGCCCGGTGCCCGTGTATTTCATCGGCATCGGCGAGAAGATCGAGGACCTGCAGCCGTTCGACGC
CGAAGAATTCGTCGAAGCCCTGCTCGGTTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(83-135)

SRP54-type protein, GTPase domain (SRP54)

(156-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411X3E5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

54.875

100

0.553

Multiple sequence alignment