Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   EYF70_RS02120 Genome accession   NZ_CP036401
Coordinates   493187..494644 (+) Length   485 a.a.
NCBI ID   WP_131143919.1    Uniprot ID   A0A411WT36
Organism   Pseudoduganella albidiflava strain DSM 17472     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 488187..499644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYF70_RS02095 (EYF70_02095) - 488533..489354 (+) 822 WP_131143915.1 ABC transporter permease -
  EYF70_RS02100 (EYF70_02100) - 489356..490168 (+) 813 WP_131143916.1 ABC transporter ATP-binding protein -
  EYF70_RS02105 (EYF70_02105) - 490368..491171 (+) 804 WP_131143917.1 inner membrane protein YpjD -
  EYF70_RS02110 (EYF70_02110) - 491168..491440 (+) 273 WP_131143918.1 PP0621 family protein -
  EYF70_RS02115 (EYF70_02115) - 491472..493190 (+) 1719 WP_229420667.1 PAS domain-containing sensor histidine kinase -
  EYF70_RS02120 (EYF70_02120) pilR 493187..494644 (+) 1458 WP_131143919.1 sigma-54 dependent transcriptional regulator Regulator
  EYF70_RS02125 (EYF70_02125) - 495335..498289 (+) 2955 WP_131143920.1 ribonucleoside-diphosphate reductase subunit alpha -
  EYF70_RS02130 (EYF70_02130) - 498414..499532 (+) 1119 WP_131143921.1 ribonucleotide-diphosphate reductase subunit beta -

Sequence

Protein


Download         Length: 485 a.a.        Molecular weight: 51919.75 Da        Isoelectric Point: 4.8926

>NTDB_id=348773 EYF70_RS02120 WP_131143919.1 493187..494644(+) (pilR) [Pseudoduganella albidiflava strain DSM 17472]
MSTSPRVLVVDDEDDLRDLLEITLLKMGLDVDGAADLRSARAQLAAHEYDLVLTDMRLPDGLGLDLVREIAASGRNLPVA
VVTAFGSAENAVVALKAGAFDYVTKPLQLDQLRMMVQSALKLNVPSGPAVPSTVDSRLKGQSAAMQALRAQIARLARSMA
PIAITGESGSGKELAAREIHAQGARADKPFIAVNCGAIPEALMEAEFFGYRKGAFTGAADERDGFFQAANGGTLMLDEVA
DLPLPMQVKLLRAIQERRVRKIGATAEEPVDVRIVSATHQDLARCVEQGKFRQDLFYRLNVIELSLPPLRERLDDLPVLT
DAILARLSAPGGPPATLGPGVLDALRGYSFPGNVRELENILERALAFSNDGVIGVADLALKGARLAEPQAATPAPAPAAS
VPVEAPVPLVSPAPAPAGERMPPLPDLSVLPSNLPAYLERVEREIIVRALDQTQYNRTQAAQLLGISFRQLRYQMQKLGI
QEPEG

Nucleotide


Download         Length: 1458 bp        

>NTDB_id=348773 EYF70_RS02120 WP_131143919.1 493187..494644(+) (pilR) [Pseudoduganella albidiflava strain DSM 17472]
ATGAGTACCTCCCCCCGCGTACTGGTAGTCGATGACGAAGACGACCTGCGCGACCTGCTGGAAATCACGCTGCTCAAGAT
GGGCCTGGACGTGGATGGCGCGGCCGACCTGCGCAGCGCGCGCGCCCAGCTGGCCGCCCACGAGTACGATCTGGTGCTGA
CGGACATGCGCCTGCCCGATGGCCTGGGCCTCGACCTGGTGCGCGAGATCGCCGCCAGCGGCCGCAACCTGCCGGTGGCC
GTGGTGACCGCGTTCGGCAGCGCGGAAAACGCCGTGGTGGCGCTGAAGGCCGGCGCCTTCGATTACGTGACGAAGCCGCT
GCAGCTCGACCAGTTGCGCATGATGGTGCAGTCGGCACTGAAGCTGAATGTGCCTTCCGGGCCGGCGGTGCCGAGCACGG
TGGACAGCCGCCTGAAAGGGCAGTCGGCGGCGATGCAGGCCCTGCGCGCGCAGATCGCCCGGCTGGCGCGTTCGATGGCG
CCGATCGCCATCACGGGAGAATCGGGTTCCGGCAAGGAACTGGCTGCCCGCGAAATCCATGCGCAGGGCGCGCGCGCCGA
CAAGCCGTTCATCGCCGTGAACTGCGGCGCGATTCCCGAGGCGCTGATGGAGGCGGAATTCTTCGGTTACCGCAAGGGCG
CGTTCACGGGCGCGGCGGACGAGCGCGACGGCTTCTTCCAGGCCGCCAACGGCGGCACGCTGATGCTCGACGAAGTGGCG
GACCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGCGGCGCGTGCGCAAGATCGGCGCCACCGCCGA
GGAACCGGTGGATGTGCGCATCGTCAGCGCCACGCACCAGGACCTGGCGCGCTGCGTGGAGCAGGGCAAGTTCCGCCAGG
ACCTGTTCTACCGGCTGAACGTGATCGAGCTGTCGCTGCCGCCGCTGCGCGAGCGGCTCGACGACCTGCCGGTGCTGACC
GACGCGATCCTGGCCCGGCTGAGCGCACCAGGCGGCCCGCCGGCCACGCTGGGGCCGGGCGTGCTCGATGCGCTGCGCGG
CTACAGCTTCCCCGGCAACGTGCGCGAACTGGAAAATATCCTGGAACGGGCGCTGGCGTTTTCCAACGATGGCGTGATCG
GCGTGGCCGACCTGGCGCTGAAGGGGGCCAGGCTGGCCGAACCCCAGGCGGCGACTCCGGCGCCCGCGCCTGCCGCTTCG
GTTCCGGTCGAGGCCCCGGTACCGCTGGTGTCCCCCGCACCGGCACCGGCCGGCGAACGGATGCCGCCATTGCCCGACCT
TTCCGTGCTGCCGTCGAACCTGCCCGCGTACCTCGAGCGGGTGGAGCGCGAGATCATCGTGCGTGCCCTCGACCAGACCC
AGTACAACCGCACCCAGGCCGCGCAACTGCTCGGGATCAGCTTCCGGCAGTTGCGCTACCAGATGCAGAAACTGGGCATC
CAGGAGCCCGAGGGGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(438-478)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411WT36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

52.941

98.144

0.52
  pilR Acinetobacter baumannii strain A118

42.797

98.763

0.423

Multiple sequence alignment