Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   EYC13_RS04680 Genome accession   NZ_CP036395
Coordinates   976063..977025 (-) Length   320 a.a.
NCBI ID   WP_001987609.1    Uniprot ID   -
Organism   Helicobacter pylori strain 29A2     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 971063..982025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC13_RS04655 - 971200..971337 (+) 138 WP_167549018.1 hypothetical protein -
  EYC13_RS04660 - 971372..972304 (-) 933 WP_001002436.1 GDP-L-fucose synthase -
  EYC13_RS04665 gmd 972297..973442 (-) 1146 WP_000659886.1 GDP-mannose 4,6-dehydratase -
  EYC13_RS04670 - 973466..974869 (-) 1404 WP_000694860.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  EYC13_RS04675 comB10 974934..976070 (-) 1137 WP_001045899.1 DNA type IV secretion system protein ComB10 Machinery gene
  EYC13_RS04680 comB9 976063..977025 (-) 963 WP_001987609.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  EYC13_RS04685 comB8 977025..977768 (-) 744 WP_000660543.1 virB8 family protein Machinery gene
  EYC13_RS04690 comB7 977765..977890 (-) 126 WP_001217874.1 hypothetical protein Machinery gene
  EYC13_RS04695 comB6 977906..978961 (-) 1056 WP_000786643.1 P-type conjugative transfer protein TrbL Machinery gene
  EYC13_RS04700 - 978967..979962 (-) 996 WP_000468812.1 PDZ domain-containing protein -
  EYC13_RS04705 - 979962..980255 (-) 294 WP_000347922.1 YbaB/EbfC family nucleoid-associated protein -
  EYC13_RS04710 panD 980266..980616 (-) 351 WP_000142212.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 36795.34 Da        Isoelectric Point: 9.5584

>NTDB_id=348678 EYC13_RS04680 WP_001987609.1 976063..977025(-) (comB9) [Helicobacter pylori strain 29A2]
MRKVLYALMGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENTPTNNKPLKEEKEETKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPKEIFNDKQFTYFKFDKKLALSKFPVVYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRSGKDYLCIRFIKKGKDE

Nucleotide


Download         Length: 963 bp        

>NTDB_id=348678 EYC13_RS04680 WP_001987609.1 976063..977025(-) (comB9) [Helicobacter pylori strain 29A2]
ATGCGTAAGGTTTTATACGCTCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCAAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTAAACATTGATTACTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAATACCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAGCACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGGTTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTAGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATCGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

94.479

100

0.963

Multiple sequence alignment