Detailed information NTG0348677

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: EYC13_RS04675
• Genome accession: NZ_CP036395
• Coordinates: 974934..976070 (-)
• Length: 378 a.a.
• NCBI ID: WP_001045899.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 29A2
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 969934..981070

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EYC13_RS04650	hypE	970128..971126 (+)	999	WP_000378813.1	hydrogenase expression/formation protein HypE	-
EYC13_RS04655	-	971200..971337 (+)	138	WP_167549018.1	hypothetical protein	-
EYC13_RS04660	-	971372..972304 (-)	933	WP_001002436.1	GDP-L-fucose synthase	-
EYC13_RS04665	gmd	972297..973442 (-)	1146	WP_000659886.1	GDP-mannose 4,6-dehydratase	-
EYC13_RS04670	-	973466..974869 (-)	1404	WP_000694860.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
EYC13_RS04675	comB10	974934..976070 (-)	1137	WP_001045899.1	DNA type IV secretion system protein ComB10	Machinery gene
EYC13_RS04680	comB9	976063..977025 (-)	963	WP_001987609.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
EYC13_RS04685	comB8	977025..977768 (-)	744	WP_000660543.1	virB8 family protein	Machinery gene
EYC13_RS04690	comB7	977765..977890 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
EYC13_RS04695	comB6	977906..978961 (-)	1056	WP_000786643.1	P-type conjugative transfer protein TrbL	Machinery gene
EYC13_RS04700	-	978967..979962 (-)	996	WP_000468812.1	PDZ domain-containing protein	-
EYC13_RS04705	-	979962..980255 (-)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
EYC13_RS04710	panD	980266..980616 (-)	351	WP_000142212.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42129.77 Da
• Isoelectric Point: 9.9227

>NTDB_id=348677 EYC13_RS04675 WP_001045899.1 974934..976070(-) (comB10) [Helicobacter pylori strain 29A2]
MNKWLKGVLVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNLQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=348677 EYC13_RS04675 WP_001045899.1 974934..976070(-) (comB10) [Helicobacter pylori strain 29A2]
ATGAATAAGTGGCTTAAGGGGGTGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCTACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTCTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCCTTTAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTAGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTAGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCCATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.032	100	0.96