Detailed information NTG0348437

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: EYC25_RS04685
• Genome accession: NZ_CP036383
• Coordinates: 974831..975967 (-)
• Length: 378 a.a.
• NCBI ID: WP_001045899.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 119A2
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 969831..980967

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EYC25_RS04660	hypE	970025..971023 (+)	999	WP_000378813.1	hydrogenase expression/formation protein HypE	-
EYC25_RS04665	-	971097..971234 (+)	138	WP_167549018.1	hypothetical protein	-
EYC25_RS04670	-	971269..972201 (-)	933	WP_001002436.1	GDP-L-fucose synthase	-
EYC25_RS04675	gmd	972194..973339 (-)	1146	WP_000659886.1	GDP-mannose 4,6-dehydratase	-
EYC25_RS04680	-	973363..974766 (-)	1404	WP_000694860.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
EYC25_RS04685	comB10	974831..975967 (-)	1137	WP_001045899.1	DNA type IV secretion system protein ComB10	Machinery gene
EYC25_RS04690	comB9	975960..976922 (-)	963	WP_001987609.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
EYC25_RS04695	comB8	976922..977665 (-)	744	WP_000660543.1	virB8 family protein	Machinery gene
EYC25_RS04700	comB7	977662..977787 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
EYC25_RS04705	comB6	977803..978858 (-)	1056	WP_000786643.1	P-type conjugative transfer protein TrbL	Machinery gene
EYC25_RS04710	-	978864..979859 (-)	996	WP_000468812.1	PDZ domain-containing protein	-
EYC25_RS04715	-	979859..980152 (-)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
EYC25_RS04720	panD	980163..980513 (-)	351	WP_000142212.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42129.77 Da
• Isoelectric Point: 9.9227

>NTDB_id=348437 EYC25_RS04685 WP_001045899.1 974831..975967(-) (comB10) [Helicobacter pylori strain 119A2]
MNKWLKGVLVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNLQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=348437 EYC25_RS04685 WP_001045899.1 974831..975967(-) (comB10) [Helicobacter pylori strain 119A2]
ATGAATAAGTGGCTTAAGGGGGTGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCTACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTCTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCCTTTAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTAGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTAGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCCATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.032	100	0.96