Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   GIX96_RS21460 Genome accession   NZ_CP045863
Coordinates   4289345..4289935 (-) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli O157:H7 strain ATCC 43890     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4284345..4294935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIX96_RS21445 (GIX96_21445) uhpT 4284985..4286376 (-) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -
  GIX96_RS21450 (GIX96_21450) uhpC 4286514..4287833 (-) 1320 WP_001301991.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  GIX96_RS21455 (GIX96_21455) uhpB 4287843..4289345 (-) 1503 WP_001303725.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  GIX96_RS21460 (GIX96_21460) letA 4289345..4289935 (-) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  GIX96_RS21465 (GIX96_21465) - 4290097..4291200 (-) 1104 WP_001089794.1 hypothetical protein -
  GIX96_RS21470 (GIX96_21470) - 4291808..4292290 (-) 483 WP_000229982.1 hypothetical protein -
  GIX96_RS21475 (GIX96_21475) - 4292438..4293091 (-) 654 WP_000168040.1 hypothetical protein -
  GIX96_RS21480 (GIX96_21480) ilvN 4293354..4293644 (-) 291 WP_001181706.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=348313 GIX96_RS21460 WP_000633668.1 4289345..4289935(-) (letA) [Escherichia coli O157:H7 strain ATCC 43890]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=348313 GIX96_RS21460 WP_000633668.1 4289345..4289935(-) (letA) [Escherichia coli O157:H7 strain ATCC 43890]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGTTGCTGGGGCTGGAACCTGATTT
GCAAGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACAATTATGCTCTCCGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGTGGCTTTCTCTCCAAGCGTTGTAGCCCTGACGA
ACTGATTGCTGCGGTGCATACGGTTGCCACAGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCACTAACCAAACGTGAACGGCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGTATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378