Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   GIJ09_RS09415 Genome accession   NZ_CP045832
Coordinates   1733666..1734298 (+) Length   210 a.a.
NCBI ID   WP_323741270.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain AUSMDU00010541     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1728666..1739298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIJ09_RS09380 (GIJ09_09380) - 1729017..1729499 (-) 483 WP_002215610.1 NuoB/complex I 20 kDa subunit family protein -
  GIJ09_RS09385 (GIJ09_09385) - 1729490..1729846 (-) 357 WP_002216332.1 NADH-quinone oxidoreductase subunit A -
  GIJ09_RS09390 (GIJ09_09390) - 1730339..1731790 (-) 1452 WP_033909671.1 spermidine synthase -
  GIJ09_RS09395 (GIJ09_09395) - 1731813..1732433 (-) 621 WP_003696151.1 fused MFS/spermidine synthase -
  GIJ09_RS09400 (GIJ09_09400) - 1732632..1733008 (-) 377 Protein_1752 transposase -
  GIJ09_RS13340 - 1733317..1733665 (-) 349 Protein_1753 hypothetical protein -
  GIJ09_RS09415 (GIJ09_09415) pilE 1733666..1734298 (+) 633 WP_323741270.1 pilin Machinery gene
  GIJ09_RS12345 - 1734416..1734799 (+) 384 Protein_1755 pilin -
  GIJ09_RS09420 (GIJ09_09420) - 1734799..1735164 (+) 366 Protein_1756 pilin -
  GIJ09_RS09425 (GIJ09_09425) lpxC 1735831..1736754 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  GIJ09_RS09430 (GIJ09_09430) - 1736883..1737299 (+) 417 Protein_1758 pilin -
  GIJ09_RS09435 (GIJ09_09435) pilE 1737761..1737904 (+) 144 WP_003691943.1 hypothetical protein Machinery gene
  GIJ09_RS12815 (GIJ09_09440) - 1738274..1738767 (+) 494 Protein_1760 pilin -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22560.36 Da        Isoelectric Point: 8.9451

>NTDB_id=348243 GIJ09_RS09415 WP_323741270.1 1733666..1734298(+) (pilE) [Neisseria gonorrhoeae strain AUSMDU00010541]
MATVRLCRWVALPLPELRNGCLPWAGAGGGRAVCRYDTEVPIYKGGLQPAKSTNSAESTDSRRRHSRISGNDEAILLAEG
QKSAVTEYYLNHGEWPENNTSAGVASASDIKGKYVKEVKVEKGVVTATMASSNVNKEIQGKKLSLWAKRQDGSVKWFCGQ
PVTRDDKAGTVTDAAGNDGKIDTKHLPSTCRDAASAGCIETPPTAFYKNT

Nucleotide


Download         Length: 633 bp        

>NTDB_id=348243 GIJ09_RS09415 WP_323741270.1 1733666..1734298(+) (pilE) [Neisseria gonorrhoeae strain AUSMDU00010541]
TTGGCAACTGTCCGGTTGTGCCGATGGGTTGCCCTGCCGCTCCCTGAGCTACGCAACGGTTGTCTGCCTTGGGCGGGCGC
GGGTGGCGGCCGGGCGGTTTGTCGCTATGATACGGAAGTTCCGATATACAAGGGCGGGCTTCAGCCCGCCAAATCCACCA
ACTCCGCCGAATCCACCGATTCCCGCCGCCGTCATTCCCGCATAAGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGT
CAAAAATCAGCCGTTACCGAGTATTACCTGAATCACGGCGAATGGCCGGAAAACAACACTTCTGCCGGCGTGGCATCCGC
TTCAGACATCAAAGGCAAATATGTTAAGGAAGTTAAAGTCGAAAAAGGCGTCGTTACCGCCACAATGGCTTCAAGCAACG
TAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAG
CCGGTTACGCGCGACGACAAAGCCGGCACCGTCACCGACGCCGCCGGCAACGACGGCAAAATCGACACCAAGCACCTGCC
GTCAACCTGCCGCGACGCAGCATCTGCCGGTTGCATAGAAACACCACCTACGGCTTTCTATAAAAATACCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(73-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

80

59.524

0.476
  pilE Neisseria gonorrhoeae strain FA1090

79.2

59.524

0.471