Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   GIJ09_RS09435 Genome accession   NZ_CP045832
Coordinates   1737761..1737904 (+) Length   47 a.a.
NCBI ID   WP_003691943.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain AUSMDU00010541     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1732761..1742904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIJ09_RS13340 - 1733317..1733665 (-) 349 Protein_1753 hypothetical protein -
  GIJ09_RS09415 (GIJ09_09415) pilE 1733666..1734298 (+) 633 WP_323741270.1 pilin Machinery gene
  GIJ09_RS12345 - 1734416..1734799 (+) 384 Protein_1755 pilin -
  GIJ09_RS09420 (GIJ09_09420) - 1734799..1735164 (+) 366 Protein_1756 pilin -
  GIJ09_RS09425 (GIJ09_09425) lpxC 1735831..1736754 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  GIJ09_RS09430 (GIJ09_09430) - 1736883..1737299 (+) 417 Protein_1758 pilin -
  GIJ09_RS09435 (GIJ09_09435) pilE 1737761..1737904 (+) 144 WP_003691943.1 hypothetical protein Machinery gene
  GIJ09_RS12815 (GIJ09_09440) - 1738274..1738767 (+) 494 Protein_1760 pilin -
  GIJ09_RS09445 (GIJ09_09445) - 1739304..1740128 (+) 825 WP_153707887.1 opacity family porin -
  GIJ09_RS09450 (GIJ09_09450) pilA 1740397..1741650 (-) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5034.54 Da        Isoelectric Point: 7.2428

>NTDB_id=348244 GIJ09_RS09435 WP_003691943.1 1737761..1737904(+) (pilE) [Neisseria gonorrhoeae strain AUSMDU00010541]
MTGFNDAAGNDKIDTKHLPSTCRDKSSAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=348244 GIJ09_RS09435 WP_003691943.1 1737761..1737904(+) (pilE) [Neisseria gonorrhoeae strain AUSMDU00010541]
ATGACGGGATTTAATGATGCCGCCGGCAACGACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70

63.83

0.447