Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EYR00_RS08220 Genome accession   NZ_CP036346
Coordinates   1730481..1732334 (-) Length   617 a.a.
NCBI ID   WP_003537635.1    Uniprot ID   B0N5N8
Organism   Thomasclavelia ramosa DSM 1402     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1725481..1737334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYR00_RS08195 (EYR00_08220) - 1725578..1725829 (-) 252 WP_003537653.1 hypothetical protein -
  EYR00_RS08200 (EYR00_08225) - 1725839..1726909 (-) 1071 WP_003537650.1 competence/damage-inducible protein A -
  EYR00_RS16100 - 1727150..1727305 (-) 156 WP_003537648.1 DUF6323 family protein -
  EYR00_RS08205 (EYR00_08235) - 1727793..1728632 (-) 840 WP_029480110.1 DUF368 domain-containing protein -
  EYR00_RS08210 (EYR00_08240) - 1728697..1729071 (-) 375 WP_003537644.1 DUF3795 domain-containing protein -
  EYR00_RS08215 (EYR00_08245) - 1729081..1730403 (-) 1323 WP_366250547.1 replication-associated recombination protein A -
  EYR00_RS08220 (EYR00_08250) rcrQ 1730481..1732334 (-) 1854 WP_003537635.1 ABC transporter ATP-binding protein Regulator
  EYR00_RS08225 (EYR00_08255) - 1732327..1734555 (-) 2229 WP_008791655.1 ABC transporter ATP-binding protein -
  EYR00_RS08230 (EYR00_08260) - 1734555..1735007 (-) 453 WP_003537632.1 MarR family winged helix-turn-helix transcriptional regulator -
  EYR00_RS08235 (EYR00_08265) - 1735729..1736148 (-) 420 WP_003537631.1 C-GCAxxG-C-C family protein -
  EYR00_RS08240 (EYR00_08270) - 1736240..1737046 (-) 807 WP_003537630.1 endonuclease/exonuclease/phosphatase family protein -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 67852.03 Da        Isoelectric Point: 5.2739

>NTDB_id=348114 EYR00_RS08220 WP_003537635.1 1730481..1732334(-) (rcrQ) [Thomasclavelia ramosa DSM 1402]
MSNQPKRNGPKFGPGGMHGMRGGEKAKDFKGTLGKLFKYLRPYYFRLVIVVIFASASTVFAIVGPKILAKATDKLSEGIM
AKVAGTGGIDFDYIGQIILILVGLYLISALFSYIQGFITSTISQRVAYDLRTSISQKMDRMPLSYFDKHTSGDILSRVTN
DIDTIAQSLNQSMSQVITSTVTVIGIFIMMLTISPVMTLIAVCVLPVSMVLIGLVMKRSQKYFARQQAALGDVNGHIEEM
YGGHNVVKAFNGEAASVEQFNEYNDNLYESAWKSQFFSGLMQPITGFVGNVGYVAVCLLGGVLAGGGSITIGDIQAFIQY
VRQFNQPITQLAQTMNMLQSTAAAAERVFEFLGEEELEPETPKVTADEVAKVEGSVTFADVNFGYLKDQTIINDFSLHVH
AGQTVAIVGPTGAGKTTIVKLLMRFYELNSGSILIDGKDIRDFGRQDLRSLFGMVLQDTWLFNGTIKENLMYGKLDASDE
EVKEACKVAYVDHFVQTLENGYETMINEESSNISQGQKQLLTIARAFLKDPKILILDEATSSVDTRTEVLIQKGMEKLME
GRTSFVIAHRLSTIRDADTIIVMKDGDIVELGNHDSLLAKDGFYASLYRSQFEGSDE

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=348114 EYR00_RS08220 WP_003537635.1 1730481..1732334(-) (rcrQ) [Thomasclavelia ramosa DSM 1402]
ATGAGTAATCAACCAAAAAGAAATGGTCCTAAATTCGGACCTGGTGGTATGCACGGAATGCGTGGCGGTGAAAAAGCTAA
AGATTTTAAAGGTACTTTAGGTAAATTATTTAAATATTTAAGACCGTATTATTTTCGTTTAGTTATAGTTGTGATTTTTG
CTTCAGCATCAACGGTTTTTGCAATCGTAGGACCAAAGATTTTAGCTAAAGCAACAGATAAATTAAGTGAAGGTATCATG
GCTAAAGTAGCTGGTACTGGTGGAATTGATTTTGATTATATTGGTCAAATTATTTTGATTTTAGTTGGATTGTATTTGAT
TAGTGCTTTATTTAGTTATATACAAGGTTTTATTACTTCAACTATTTCACAACGAGTTGCTTATGATTTAAGAACATCAA
TTTCTCAAAAGATGGATCGGATGCCATTAAGTTATTTTGATAAACATACTAGTGGTGATATTTTAAGCCGAGTAACAAAT
GATATCGATACAATCGCACAATCACTAAATCAAAGTATGTCACAGGTAATTACGTCGACAGTAACGGTAATTGGAATCTT
TATCATGATGTTGACTATTTCACCAGTTATGACTTTGATCGCAGTTTGCGTATTACCAGTATCAATGGTTTTGATTGGTT
TAGTAATGAAACGTTCACAAAAATATTTTGCGCGTCAACAAGCTGCTTTAGGTGATGTCAATGGTCATATTGAAGAAATG
TATGGTGGTCATAATGTGGTTAAAGCATTTAATGGTGAAGCTGCTTCAGTAGAACAATTTAATGAGTATAATGATAATTT
ATATGAAAGTGCTTGGAAGTCACAATTCTTTTCGGGTTTGATGCAGCCAATCACAGGATTTGTTGGAAATGTTGGATACG
TTGCGGTATGTTTATTAGGTGGTGTTCTTGCTGGTGGTGGTAGTATCACAATTGGTGATATTCAGGCCTTTATTCAATAT
GTAAGACAATTTAATCAACCAATAACACAATTAGCACAGACAATGAATATGTTACAAAGTACAGCAGCAGCGGCTGAACG
TGTTTTTGAATTTTTAGGTGAAGAAGAATTAGAACCAGAAACACCAAAAGTTACTGCTGATGAGGTGGCTAAAGTTGAAG
GTTCTGTTACCTTTGCTGATGTTAATTTTGGGTATTTAAAAGATCAAACGATTATTAATGATTTTAGTTTACATGTTCAT
GCGGGGCAAACTGTTGCAATTGTAGGACCGACTGGTGCTGGAAAAACAACGATCGTAAAATTATTAATGCGATTCTATGA
ATTAAATAGTGGTTCGATTCTTATTGATGGTAAAGATATTCGTGATTTTGGACGTCAGGATTTACGATCATTATTTGGAA
TGGTTTTACAAGATACTTGGTTGTTTAATGGAACAATTAAGGAAAACCTAATGTATGGAAAATTAGATGCAAGTGATGAA
GAAGTCAAGGAGGCTTGTAAAGTCGCTTATGTTGATCATTTTGTACAAACATTAGAGAATGGATATGAAACAATGATCAA
TGAGGAATCATCTAACATTTCTCAAGGGCAAAAACAACTTTTAACAATTGCACGTGCTTTCTTAAAAGATCCAAAAATTT
TGATTCTTGATGAAGCAACTTCTTCAGTAGATACAAGAACAGAAGTATTAATTCAAAAAGGAATGGAAAAGCTAATGGAG
GGAAGAACAAGTTTTGTCATTGCCCATCGTTTATCAACAATTCGTGATGCTGACACAATTATTGTAATGAAAGATGGTGA
CATTGTAGAACTTGGAAATCATGATTCATTATTGGCTAAAGATGGCTTCTATGCCTCATTGTATCGTTCTCAATTCGAGG
GATCAGATGAATAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(393-541)

ABC transporter transmembrane region (ABC_membrane)

(47-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0N5N8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.316

94.489

0.494

Multiple sequence alignment