Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   GIJ02_RS01890 Genome accession   NZ_CP045827
Coordinates   418105..418737 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain AUSMDU00014361     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 413105..423737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIJ02_RS01865 (GIJ02_01865) yhfG 413237..413404 (+) 168 WP_000736860.1 YhfG family protein -
  GIJ02_RS01870 (GIJ02_01870) fic 413394..413996 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  GIJ02_RS01875 (GIJ02_01875) pabA 414028..414591 (+) 564 WP_000601850.1 aminodeoxychorismate synthase component 2 -
  GIJ02_RS01880 (GIJ02_01880) argD 414677..415897 (+) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  GIJ02_RS01885 (GIJ02_01885) yhfK 415964..418054 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  GIJ02_RS01890 (GIJ02_01890) crp 418105..418737 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  GIJ02_RS01895 (GIJ02_01895) yhfA 419039..419443 (+) 405 WP_001148908.1 OsmC family protein -
  GIJ02_RS01900 (GIJ02_01900) prkB 419498..420367 (-) 870 WP_001274680.1 phosphoribulokinase -
  GIJ02_RS01905 (GIJ02_01905) yheU 420421..420639 (-) 219 WP_000907085.1 YheU family protein -
  GIJ02_RS01910 (GIJ02_01910) yheT 420633..421655 (-) 1023 WP_000057356.1 hydrolase -
  GIJ02_RS01915 (GIJ02_01915) yheS 421655..423568 (-) 1914 WP_153781500.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=348114 GIJ02_RS01890 WP_000242755.1 418105..418737(-) (crp) [Escherichia coli strain AUSMDU00014361]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=348114 GIJ02_RS01890 WP_000242755.1 418105..418737(-) (crp) [Escherichia coli strain AUSMDU00014361]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment