Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Pan110_RS06260 Genome accession   NZ_CP036277
Coordinates   1671749..1672237 (+) Length   162 a.a.
NCBI ID   WP_145105205.1    Uniprot ID   -
Organism   Gimesia panareensis strain Pan110     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1666749..1677237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Pan110_RS06245 (Pan110_12970) - 1669855..1670493 (+) 639 WP_145105195.1 50S ribosomal protein L25 -
  Pan110_RS06250 (Pan110_12980) pth 1670553..1671119 (+) 567 WP_145105198.1 aminoacyl-tRNA hydrolase -
  Pan110_RS06255 (Pan110_12990) rpsF 1671244..1671663 (+) 420 WP_145105201.1 30S ribosomal protein S6 -
  Pan110_RS06260 (Pan110_13000) ssb 1671749..1672237 (+) 489 WP_145105205.1 single-stranded DNA-binding protein Machinery gene
  Pan110_RS06265 (Pan110_13010) rplI 1672324..1672830 (+) 507 WP_145105208.1 50S ribosomal protein L9 -
  Pan110_RS06270 (Pan110_13020) dnaB 1673013..1674440 (+) 1428 WP_145105211.1 replicative DNA helicase -
  Pan110_RS06275 (Pan110_13030) - 1674489..1676468 (+) 1980 WP_145105214.1 hypothetical protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 16938.63 Da        Isoelectric Point: 4.9628

>NTDB_id=347807 Pan110_RS06260 WP_145105205.1 1671749..1672237(+) (ssb) [Gimesia panareensis strain Pan110]
MASFNKVILVGNLTRDPQVRYTPGGSAVAEIGLAVNRSWFDKNSNSRKEETTFVDVTLWGRTAEVASEYLTKGRSVLIEG
RLQLDQWDDKESGQKRSKLKVVGENMTMLGGRGESGGGAPGGGGGGGYGSRGGSAPSQGGSSSPADSFYDSPGGMPDDDV
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=347807 Pan110_RS06260 WP_145105205.1 1671749..1672237(+) (ssb) [Gimesia panareensis strain Pan110]
ATGGCCAGTTTCAACAAAGTCATCCTGGTAGGAAATCTGACTCGCGATCCACAGGTGCGTTACACGCCTGGAGGGAGTGC
GGTTGCGGAAATTGGTCTGGCAGTGAATCGGAGCTGGTTTGACAAGAATTCCAATTCCCGGAAGGAAGAAACCACCTTCG
TCGATGTCACTCTCTGGGGGCGTACTGCGGAAGTGGCCAGCGAGTATCTGACCAAAGGTCGTTCAGTCCTGATCGAAGGT
CGTCTACAGCTGGATCAGTGGGACGACAAAGAATCGGGCCAGAAACGCAGCAAGCTGAAAGTGGTTGGCGAAAACATGAC
CATGCTGGGGGGACGCGGCGAATCAGGCGGTGGTGCTCCCGGTGGCGGCGGAGGCGGCGGCTACGGGTCACGTGGCGGCA
GCGCACCGTCACAGGGCGGTTCGTCCAGCCCTGCTGATTCCTTTTATGATTCACCAGGCGGAATGCCCGATGACGACGTG
CCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

43.82

100

0.481
  ssb Neisseria meningitidis MC58

38.857

100

0.42
  ssb Neisseria gonorrhoeae MS11

38.857

100

0.42

Multiple sequence alignment