Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   EYC57_RS05465 Genome accession   NZ_CP036256
Coordinates   1135084..1136478 (-) Length   464 a.a.
NCBI ID   WP_131074742.1    Uniprot ID   -
Organism   Xanthomonas oryzae strain BAI23     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1130084..1141478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC57_RS05445 (EYC57_05445) - 1130724..1131293 (+) 570 WP_242628850.1 hypothetical protein -
  EYC57_RS05450 (EYC57_05450) - 1131263..1132789 (+) 1527 WP_053502734.1 hypothetical protein -
  EYC57_RS05455 (EYC57_05455) pilB 1132824..1134557 (+) 1734 WP_053502736.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EYC57_RS05460 (EYC57_05460) - 1134566..1135087 (-) 522 WP_207306597.1 Fic family protein -
  EYC57_RS05465 (EYC57_05465) pilR 1135084..1136478 (-) 1395 WP_131074742.1 sigma-54 dependent transcriptional regulator Regulator
  EYC57_RS05470 (EYC57_05470) - 1136809..1138422 (-) 1614 WP_053502740.1 HAMP domain-containing sensor histidine kinase -
  EYC57_RS05475 (EYC57_05475) sucC 1138656..1139825 (+) 1170 WP_019300809.1 ADP-forming succinate--CoA ligase subunit beta -
  EYC57_RS05480 (EYC57_05480) sucD 1139850..1140725 (+) 876 WP_019300808.1 succinate--CoA ligase subunit alpha -
  EYC57_RS05485 (EYC57_05485) - 1141045..1141341 (+) 297 WP_131074743.1 hypothetical protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50203.61 Da        Isoelectric Point: 6.3800

>NTDB_id=347726 EYC57_RS05465 WP_131074742.1 1135084..1136478(-) (pilR) [Xanthomonas oryzae strain BAI23]
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPLPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGNAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=347726 EYC57_RS05465 WP_131074742.1 1135084..1136478(-) (pilR) [Xanthomonas oryzae strain BAI23]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGGGCCGTAT
GGGGCTGCGCATCAGCACCGCTGCCAATCTGGCCGAAGCGCGCGAACTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGCTTGCCCGACGGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAATACCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGT
GGACATCGGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCACTGCCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGC
AGTCAGGCGCCGGTCTACATCGTCGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGC
ACGCGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGC
CTCCGGCGAAACCCTGGTGGACGTACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTT
TTCGACACGATCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCGCTCGA
CGCACTGGATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAACGCCGCC
GTGGAACCACGCGAAGCTGTCGTCGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCTGCGCAGTTAGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.499

99.784

0.634
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489

Multiple sequence alignment