Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   GII78_RS10460 Genome accession   NZ_CP045824
Coordinates   2090980..2092755 (-) Length   591 a.a.
NCBI ID   WP_049141166.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB8_B10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2085980..2097755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII78_RS10440 (GII78_10440) desE 2086364..2087422 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -
  GII78_RS10445 (GII78_10445) desK 2087542..2088654 (+) 1113 WP_003231271.1 two-component sensor histidine kinase DesK -
  GII78_RS10450 (GII78_10450) desR 2088673..2089272 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  GII78_RS10455 (GII78_10455) walN 2089869..2090732 (-) 864 WP_113712921.1 3D domain-containing protein -
  GII78_RS10460 (GII78_10460) recQ 2090980..2092755 (-) 1776 WP_049141166.1 DNA helicase RecQ Machinery gene
  GII78_RS10470 (GII78_10470) azoJ 2093320..2093946 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  GII78_RS10475 (GII78_10475) stpP 2094097..2094588 (-) 492 WP_032725972.1 TraR/DksA family transcriptional regulator -
  GII78_RS10480 (GII78_10480) - 2094663..2094995 (-) 333 WP_003231257.1 hypothetical protein -
  GII78_RS10485 (GII78_10485) - 2095073..2095300 (+) 228 WP_014480021.1 hypothetical protein -
  GII78_RS10490 (GII78_10490) yocM 2095287..2095763 (-) 477 WP_049141169.1 salt stress-responsive protein YocM -
  GII78_RS10495 (GII78_10495) - 2095830..2096093 (+) 264 WP_004399338.1 hypothetical protein -
  GII78_RS10500 (GII78_10500) - 2096098..2096331 (+) 234 WP_003231251.1 hypothetical protein -
  GII78_RS10505 (GII78_10505) yozO 2096425..2096769 (-) 345 WP_003220141.1 PH domain-containing protein -
  GII78_RS10510 (GII78_10510) yozC 2097126..2097329 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67369.81 Da        Isoelectric Point: 6.2904

>NTDB_id=347726 GII78_RS10460 WP_049141166.1 2090980..2092755(-) (recQ) [Bacillus subtilis strain MB8_B10]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVNALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDERKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=347726 GII78_RS10460 WP_049141166.1 2090980..2092755(-) (recQ) [Bacillus subtilis strain MB8_B10]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATATCACCGTTGATTTCCTTGATGAAGGATCAAGTTAATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCAGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAGGTCAGGGCAGGCCGGTATCATGGAGGTTTGGCTGATGA
TGAGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATTAGATTTGTTCTGCATGCACAAATTCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGCCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACCGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCAGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGCGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(403-507)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

HRDC domain (HRDC)

(518-583)

DEAD/DEAH box helicase (DEAD)

(21-182)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.492

100

0.995

Multiple sequence alignment