Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   EYC54_RS05855 Genome accession   NZ_CP036252
Coordinates   1200048..1201442 (-) Length   464 a.a.
NCBI ID   WP_024711611.1    Uniprot ID   -
Organism   Xanthomonas oryzae strain NJ611     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1195048..1206442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC54_RS05835 (EYC54_05835) - 1195682..1196257 (+) 576 WP_242629581.1 hypothetical protein -
  EYC54_RS05840 (EYC54_05840) - 1196227..1197753 (+) 1527 WP_131077926.1 hypothetical protein -
  EYC54_RS05845 (EYC54_05845) pilB 1197788..1199521 (+) 1734 WP_053502736.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EYC54_RS05850 (EYC54_05850) - 1199530..1200009 (-) 480 WP_131079000.1 Fic family protein -
  EYC54_RS05855 (EYC54_05855) pilR 1200048..1201442 (-) 1395 WP_024711611.1 sigma-54 dependent transcriptional regulator Regulator
  EYC54_RS05860 (EYC54_05860) - 1201773..1203386 (-) 1614 WP_131077927.1 HAMP domain-containing sensor histidine kinase -
  EYC54_RS05865 (EYC54_05865) sucC 1203620..1204789 (+) 1170 WP_019300809.1 ADP-forming succinate--CoA ligase subunit beta -
  EYC54_RS05870 (EYC54_05870) sucD 1204814..1205689 (+) 876 WP_019300808.1 succinate--CoA ligase subunit alpha -
  EYC54_RS05875 (EYC54_05875) - 1206009..1206305 (+) 297 WP_131074743.1 hypothetical protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50201.60 Da        Isoelectric Point: 6.3803

>NTDB_id=347649 EYC54_RS05855 WP_024711611.1 1200048..1201442(-) (pilR) [Xanthomonas oryzae strain NJ611]
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGELVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGNAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=347649 EYC54_RS05855 WP_024711611.1 1200048..1201442(-) (pilR) [Xanthomonas oryzae strain NJ611]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGGGCCGTAT
GGGGCTGCGCATCAGCACCGCTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGCTTGCCCGACGGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGT
GGACATCGGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCACCGCCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGC
AGTCAGGCGCCGGTCTACATCGTCGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGC
ACGCGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGC
CTCCGGCGAAACCCTGGTGGACGTACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGAACTGGTCTCCGACGGCCGTT
TTCGACACGATCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCGCTCGA
CGCACTGGATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAACGCCGCC
GTGGAACCACGCGAAGCTGTCGTCGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCTGCGCAGTTAGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.499

99.784

0.634
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489

Multiple sequence alignment