Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Pstu14405_RS17855 Genome accession   NZ_CP036186
Coordinates   3871810..3872301 (-) Length   163 a.a.
NCBI ID   WP_003281797.1    Uniprot ID   A0A210XTT8
Organism   Stutzerimonas stutzeri strain ATCC 14405     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3866810..3877301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Pstu14405_RS17830 (Pstu14405_17935) - 3866919..3868265 (-) 1347 WP_003281789.1 MotA/TolQ/ExbB proton channel family protein -
  Pstu14405_RS17835 (Pstu14405_17940) - 3868262..3869047 (-) 786 WP_003281791.1 DUF3450 domain-containing protein -
  Pstu14405_RS17840 (Pstu14405_17945) - 3869232..3869918 (+) 687 WP_003281793.1 OmpW/AlkL family protein -
  Pstu14405_RS17845 (Pstu14405_17950) - 3869993..3870922 (-) 930 WP_003281795.1 NAD-dependent epimerase/dehydratase family protein -
  Pstu14405_RS17850 (Pstu14405_17955) - 3870915..3871799 (-) 885 WP_003281796.1 sugar nucleotide-binding protein -
  Pstu14405_RS17855 (Pstu14405_17960) ssb 3871810..3872301 (-) 492 WP_003281797.1 single-stranded DNA-binding protein Machinery gene
  Pstu14405_RS17860 (Pstu14405_17965) - 3872469..3873836 (-) 1368 WP_003281798.1 MFS transporter -
  Pstu14405_RS17865 (Pstu14405_17970) uvrA 3873968..3876811 (+) 2844 WP_003281800.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18314.38 Da        Isoelectric Point: 5.9492

>NTDB_id=347417 Pstu14405_RS17855 WP_003281797.1 3871810..3872301(-) (ssb) [Stutzerimonas stutzeri strain ATCC 14405]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGSSDDAPRQPRPQREPQQAPRQQAQPQQPAARQQPAPDYDSFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=347417 Pstu14405_RS17855 WP_003281797.1 3871810..3872301(-) (ssb) [Stutzerimonas stutzeri strain ATCC 14405]
ATGGCCAGAGGGGTAAACAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGACAGCTGGAAGGACAAGCAGACCGGTCAGCTTCAGGAGCGCACCGAGT
GGCACCGTGTGGTGCTGTTCGGCAAGGTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCCGCCTGCAGACTCGCGAGTGGGAGAAGGATGGCGTCAAGCGCTACACCACCGAAATCGTCGTCGACATGAATGGTAC
CATGCAGCTGCTCGGCGGCCGTGGCGGCAGTTCCGATGACGCGCCACGTCAGCCGCGCCCGCAGCGCGAGCCGCAACAGG
CTCCGCGTCAGCAGGCTCAGCCGCAGCAGCCGGCCGCACGGCAGCAGCCGGCGCCGGACTATGACAGCTTCGATGACGAC
ATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A210XTT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.571

100

0.607
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.515
  ssb Glaesserella parasuis strain SC1401

45.355

100

0.509
  ssb Neisseria meningitidis MC58

46.591

100

0.503

Multiple sequence alignment