Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdK   Type   Machinery gene
Locus tag   RJ40_RS04310 Genome accession   NZ_CP036172
Coordinates   886375..887412 (-) Length   345 a.a.
NCBI ID   WP_265582127.1    Uniprot ID   A0A8A3S4U8
Organism   Methanofollis aquaemaris strain N2F9704     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 881375..892412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ40_RS04285 (RJ40_04235) - 882620..883117 (+) 498 WP_265582123.1 YkgJ family cysteine cluster protein -
  RJ40_RS04290 - 883243..883377 (+) 135 WP_265582124.1 hypothetical protein -
  RJ40_RS04295 (RJ40_04245) - 883374..883718 (-) 345 WP_265582125.1 type II secretion system protein E -
  RJ40_RS04300 (RJ40_04250) - 883756..885240 (-) 1485 WP_265582605.1 cobyric acid synthase -
  RJ40_RS04305 (RJ40_04255) yciH 885410..885715 (+) 306 WP_265582126.1 stress response translation initiation inhibitor YciH -
  RJ40_RS04310 (RJ40_04260) epdK 886375..887412 (-) 1038 WP_265582127.1 type II secretion system F family protein Machinery gene
  RJ40_RS04315 (RJ40_04265) epdJ 887414..888337 (-) 924 WP_265582128.1 type II secretion system F family protein Machinery gene
  RJ40_RS04320 (RJ40_04270) epdL 888334..890685 (-) 2352 WP_265582129.1 type II/IV secretion system ATPase subunit Machinery gene
  RJ40_RS04325 (RJ40_04275) - 890678..891304 (-) 627 WP_265582130.1 hypothetical protein -
  RJ40_RS04330 (RJ40_04280) minD 891412..892197 (-) 786 WP_265582131.1 cell division ATPase MinD -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38080.18 Da        Isoelectric Point: 4.8382

>NTDB_id=347319 RJ40_RS04310 WP_265582127.1 886375..887412(-) (epdK) [Methanofollis aquaemaris strain N2F9704]
MGFKTLFDDFLNRDEARTVQVDAGELDQYERQDHEIVNKIEHQRKMQVGVGRFLKHPIEVLTETPTNSLIATVPFSFLFF
IVGISLIVVNYGWQAVMNSTLVDDVIVFSVLIPVVPLALLDFKEGRREKNLEAALPNFFRDVAGMNDSGMTLPSAIHIVS
EGEYGMLTPYIRKLDIDMSWNVPFVEAITTFGKRIGTPLAERSVDLIAKASTAGGDVSEVLRAAARDSYEFINLKTERAS
NMLIYEVIIVAAFFVFLFVIAILESTFLTTMADAGAQAAASGAGSQFIGNVDMDLYKRIFSHSAMIMGFFSGLVAGQMGE
GRAAAGLKFSALMLLIAWLLFRFAI

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=347319 RJ40_RS04310 WP_265582127.1 886375..887412(-) (epdK) [Methanofollis aquaemaris strain N2F9704]
ATGGGATTCAAAACACTCTTCGACGATTTCCTCAACCGCGACGAGGCCCGCACGGTTCAGGTGGATGCAGGAGAACTCGA
CCAGTATGAGCGGCAGGATCACGAGATCGTCAACAAGATCGAACACCAGCGCAAGATGCAGGTCGGCGTTGGCCGATTCC
TCAAGCACCCTATCGAGGTGCTCACCGAGACTCCGACCAATAGTCTCATTGCCACGGTGCCGTTCTCGTTCCTTTTCTTT
ATCGTGGGCATCTCCCTGATCGTTGTGAACTACGGATGGCAGGCCGTCATGAACTCCACGCTTGTCGACGATGTCATCGT
CTTTTCGGTTCTCATCCCGGTGGTTCCGCTTGCCCTTCTTGATTTCAAGGAGGGGAGAAGGGAGAAAAACCTTGAAGCCG
CCCTCCCGAACTTCTTCAGGGACGTTGCAGGGATGAACGACTCGGGGATGACCCTCCCCAGTGCTATCCATATCGTTTCC
GAGGGCGAGTACGGCATGCTCACGCCGTACATCAGGAAACTCGATATCGACATGTCCTGGAATGTACCCTTCGTCGAGGC
GATCACGACCTTCGGGAAGCGGATCGGCACCCCGCTTGCCGAGCGGTCGGTCGACCTCATTGCAAAGGCGAGCACTGCCG
GTGGCGACGTTTCCGAGGTGCTGCGGGCTGCGGCGAGGGACAGTTACGAGTTCATTAACCTCAAGACCGAGCGGGCAAGC
AACATGCTCATCTATGAGGTGATCATCGTCGCCGCCTTCTTTGTCTTCCTCTTTGTCATTGCGATCCTTGAGTCCACCTT
CCTCACCACGATGGCCGATGCCGGGGCGCAGGCGGCGGCGTCAGGGGCCGGGAGTCAGTTCATCGGTAACGTCGACATGG
ATCTGTACAAACGTATCTTCTCTCACTCTGCGATGATCATGGGGTTCTTCTCAGGGTTGGTCGCAGGGCAGATGGGTGAA
GGCCGGGCGGCCGCCGGACTCAAGTTCTCGGCATTGATGCTTCTCATCGCCTGGTTGCTCTTCAGGTTCGCGATCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(138-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8A3S4U8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdK Methanoculleus thermophilus strain DSM 2373

61.143

100

0.62

Multiple sequence alignment