Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   RJ40_RS04315 Genome accession   NZ_CP036172
Coordinates   887414..888337 (-) Length   307 a.a.
NCBI ID   WP_265582128.1    Uniprot ID   -
Organism   Methanofollis aquaemaris strain N2F9704     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 882414..893337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ40_RS04285 (RJ40_04235) - 882620..883117 (+) 498 WP_265582123.1 YkgJ family cysteine cluster protein -
  RJ40_RS04290 - 883243..883377 (+) 135 WP_265582124.1 hypothetical protein -
  RJ40_RS04295 (RJ40_04245) - 883374..883718 (-) 345 WP_265582125.1 type II secretion system protein E -
  RJ40_RS04300 (RJ40_04250) - 883756..885240 (-) 1485 WP_265582605.1 cobyric acid synthase -
  RJ40_RS04305 (RJ40_04255) yciH 885410..885715 (+) 306 WP_265582126.1 stress response translation initiation inhibitor YciH -
  RJ40_RS04310 (RJ40_04260) epdK 886375..887412 (-) 1038 WP_265582127.1 type II secretion system F family protein Machinery gene
  RJ40_RS04315 (RJ40_04265) epdJ 887414..888337 (-) 924 WP_265582128.1 type II secretion system F family protein Machinery gene
  RJ40_RS04320 (RJ40_04270) epdL 888334..890685 (-) 2352 WP_265582129.1 type II/IV secretion system ATPase subunit Machinery gene
  RJ40_RS04325 (RJ40_04275) - 890678..891304 (-) 627 WP_265582130.1 hypothetical protein -
  RJ40_RS04330 (RJ40_04280) minD 891412..892197 (-) 786 WP_265582131.1 cell division ATPase MinD -
  RJ40_RS04335 (RJ40_04285) - 892323..892571 (-) 249 WP_265582132.1 hypothetical protein -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34020.95 Da        Isoelectric Point: 8.9141

>NTDB_id=347320 RJ40_RS04315 WP_265582128.1 887414..888337(-) (epdJ) [Methanofollis aquaemaris strain N2F9704]
MNGFERFSFNLLGRQAKAKRDDFVELRSDLVQARMKTPFEAYLATAYVSSVLAGLVMAFLIGGFTYLLNIPSMITYKGAL
PGFFLGLSDYRLLIGTTLAIVLSLLIFGGVTYFSFLMYPKVVAGNRRRNIDATLPYAINYVTSMSTAGITPAEVFRLLGQ
SPIYGETAVEARYISREIDMFGKDLIEAMRIASTFTPSSRMKEFLQGAMATISSGANLTEYFRNKAVQYSNENQQQQKTF
LETLGLIAESYVTAMVAGTLFLIILQSIMSIMSGESSPMFLIIIIYFLIPLGSVMFLILISAMTPEV

Nucleotide


Download         Length: 924 bp        

>NTDB_id=347320 RJ40_RS04315 WP_265582128.1 887414..888337(-) (epdJ) [Methanofollis aquaemaris strain N2F9704]
ATGAATGGTTTTGAACGGTTCAGTTTCAACTTGTTAGGACGGCAGGCAAAGGCAAAAAGAGACGATTTCGTCGAGTTGAG
GAGCGACCTGGTGCAGGCGCGGATGAAGACCCCCTTCGAGGCCTACCTTGCGACCGCATACGTCTCTTCGGTCCTTGCCG
GTCTGGTCATGGCCTTTCTCATCGGGGGCTTCACCTATCTCCTCAACATTCCCTCGATGATCACCTACAAAGGGGCGCTG
CCCGGTTTCTTCCTCGGTCTCTCCGACTACCGTCTTCTCATCGGAACAACCCTGGCGATCGTTCTCTCCCTGCTTATCTT
CGGTGGGGTGACCTACTTCTCGTTCCTCATGTATCCCAAGGTGGTCGCCGGGAACAGGCGGCGGAACATCGACGCCACCC
TCCCGTACGCCATCAATTATGTAACTTCAATGTCGACGGCCGGGATCACCCCGGCCGAGGTCTTCCGGCTCCTCGGGCAG
AGTCCGATCTACGGCGAGACTGCAGTCGAGGCGCGGTACATCTCACGCGAGATCGACATGTTCGGCAAGGATCTCATCGA
GGCGATGCGGATCGCCTCGACCTTCACCCCGAGTTCCAGGATGAAAGAATTTCTCCAGGGCGCCATGGCAACCATCTCCT
CGGGTGCCAACCTCACCGAATACTTCAGGAACAAGGCGGTCCAGTACAGCAACGAGAACCAGCAGCAGCAGAAGACCTTC
CTCGAGACCCTGGGTTTGATCGCCGAGTCCTATGTGACGGCGATGGTGGCCGGCACGCTCTTTTTGATCATCCTCCAGTC
GATTATGTCTATTATGAGTGGGGAATCGAGCCCGATGTTTTTGATCATCATCATCTACTTCCTCATTCCCTTAGGAAGCG
TGATGTTTCTCATTCTGATCAGTGCGATGACCCCGGAGGTGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(138-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanoculleus thermophilus strain DSM 2373

72.313

100

0.723

Multiple sequence alignment