Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   KAN02_RS01690 Genome accession   NZ_CP036171
Coordinates   359501..360241 (+) Length   246 a.a.
NCBI ID   WP_087606415.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain KAN02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 354501..365241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAN02_RS01675 (KAN02_01675) ponA 355082..357640 (-) 2559 WP_031982123.1 penicillin-binding protein PBP1a -
  KAN02_RS01680 (KAN02_01680) comM 357802..358860 (+) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene
  KAN02_RS01685 (KAN02_01685) pilN 358860..359504 (+) 645 WP_087606414.1 PilN domain-containing protein Machinery gene
  KAN02_RS01690 (KAN02_01690) pilO 359501..360241 (+) 741 WP_087606415.1 type 4a pilus biogenesis protein PilO Machinery gene
  KAN02_RS01695 (KAN02_01695) pilP 360252..360779 (+) 528 WP_087606416.1 pilus assembly protein PilP Machinery gene
  KAN02_RS01700 (KAN02_01700) pilQ 360842..363007 (+) 2166 WP_087606417.1 type IV pilus secretin PilQ family protein Machinery gene
  KAN02_RS01705 (KAN02_01705) aroK 363019..363588 (+) 570 WP_002051689.1 shikimate kinase AroK -
  KAN02_RS01710 (KAN02_01710) aroB 363617..364699 (+) 1083 WP_002051763.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27605.46 Da        Isoelectric Point: 5.4027

>NTDB_id=347280 KAN02_RS01690 WP_087606415.1 359501..360241(+) (pilO) [Acinetobacter nosocomialis strain KAN02]
MSQDELQKLSLEQSASKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSISALPRIVTMHDFVVEAAPAKDSKSDIPVLNYSIKAKTYRYIGAPEASAQPAKAAAATAPTS
PNAQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=347280 KAN02_RS01690 WP_087606415.1 359501..360241(+) (pilO) [Acinetobacter nosocomialis strain KAN02]
ATGAGTCAAGATGAACTGCAAAAATTATCATTAGAGCAATCAGCTTCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTTGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACTTGCTGGATTTTTATTT
TCTTTGCTGTATTGGCTTTGGGTTATTTTGTTGCTATTCAGCCAAAGCTACAAGCAATTGATAATGCCCAAGCTCAGGAA
AGTAATTTATTAAATGAATTTCGAGAAAAAGACTCCAAATTACGTAACCTTCAGCAGTATCAAGTGCAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAATTAGAACAATTGCCGAAAGAAACAGAGATTCCAAGTTTAGTTGAGGATATTAACTTAA
CTGGTGTGAACTCTGGATTGAAATTTAAAAATATTCGTTTAGAGGATGAAGTAAAGCAGGAAATTTTTATTGAACAACCA
ATTGCCATCGAAGCAACAGGCGACTATCACGCTTTCGGTGCTTTCGTAAGTAGTATCTCTGCTTTGCCACGTATTGTGAC
GATGCATGACTTTGTTGTAGAGGCTGCTCCAGCTAAAGATAGTAAGTCAGATATTCCTGTGCTTAATTATTCTATTAAAG
CCAAAACCTATCGATATATAGGAGCACCAGAGGCATCGGCACAACCAGCTAAGGCTGCAGCGGCGACTGCACCAACTAGC
CCTAATGCTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

89.431

100

0.894
  comO Acinetobacter baylyi ADP1

70.954

97.967

0.695

Multiple sequence alignment