Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   EXW55_RS26150 Genome accession   NZ_CP036121
Coordinates   5095399..5096526 (+) Length   375 a.a.
NCBI ID   WP_002034987.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS635     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5090399..5101526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW55_RS26120 (EXW55_26595) spoIIIJ 5090435..5091202 (-) 768 WP_002016477.1 YidC family membrane integrase SpoIIIJ -
  EXW55_RS26125 (EXW55_26600) rnpA 5091255..5091602 (-) 348 WP_002089963.1 ribonuclease P protein component -
  EXW55_RS26130 (EXW55_26605) rpmH 5091679..5091813 (-) 135 WP_002068706.1 50S ribosomal protein L34 -
  EXW55_RS26135 (EXW55_26610) dnaA 5092377..5093717 (+) 1341 WP_002016481.1 chromosomal replication initiator protein DnaA -
  EXW55_RS26140 (EXW55_26615) dnaN 5093900..5095045 (+) 1146 WP_002016482.1 DNA polymerase III subunit beta -
  EXW55_RS26145 (EXW55_26620) yaaA 5095174..5095386 (+) 213 WP_002016484.1 S4 domain-containing protein YaaA -
  EXW55_RS26150 (EXW55_26625) recF 5095399..5096526 (+) 1128 WP_002034987.1 DNA replication/repair protein RecF Machinery gene
  EXW55_RS26155 (EXW55_26630) gyrB 5096565..5098487 (+) 1923 WP_002034986.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  EXW55_RS26160 (EXW55_26635) gyrA 5098576..5101047 (+) 2472 WP_002016488.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43514.79 Da        Isoelectric Point: 6.8418

>NTDB_id=346999 EXW55_RS26150 WP_002034987.1 5095399..5096526(+) (recF) [Bacillus mycoides strain JAS635]
MFITEIQLKNYRNYEHLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDYGNIKGRLQRRNSS
ISLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVEGIEHETLKEAKTIHVTNGTVDCEIDRK

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=346999 EXW55_RS26150 WP_002034987.1 5095399..5096526(+) (recF) [Bacillus mycoides strain JAS635]
TTGTTTATTACAGAAATACAATTAAAAAACTATCGCAATTATGAGCATTTAGAGCTTTCCTTTGAGGATAAAGTCAATGT
AATTATTGGTGAAAATGCGCAAGGGAAAACGAATCTGATGGAAGCTATTTATGTATTGGCGATGGCGAAATCTCATAGAA
CTTCGAACGATCGTGAACTCATTCGTTGGGATGAGGATTATGGTAATATAAAAGGTAGATTACAAAGGCGAAATAGTTCA
ATATCCTTAGAATTAAACATTTCAAAAAAAGGTAAAAAGGCAAAGTTAAATCAGTTAGAACAACAAAAATTGAGCCAGTA
TATTGGTGAAATGAATGTTGTTATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTACGAAGACGCT
TTTTGGATATGGAACTTGGACAAATAGCTCCGGTCTATTTGTATGAATTAAGTCAATATCAAAAGGTACTCACGCAACGA
AATCATTTACTTAAGAAGATGCAAGGGAATAGTAAAAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTGCAAAAATTTTGCGAAAACGTTTTGAGTTTTTGCATCTACTACAAGAATGGGCTGCTCCAATTCATCGCGGAA
TTAGCAGGGGATTAGAGGAGTTAGAAATCGTTTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTTCGGGGTACAACTTTACTTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCACAAGGACAACAACGAACAACCGCACTAT
CCCTAAAATTGGCTGAAATTGAATTGATATACTCAGAGGTTAAGGAATATCCAATTCTTTTACTAGATGATGTGTTATCA
GAATTAGATGATTATCGTCAATCGCATCTGCTAAATACAATTCAAGGAAAAGTACAAACCTTTGTGACAACGACGAGTGT
CGAGGGAATTGAACACGAAACATTGAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGACA
GAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

67.12

98.133

0.659

Multiple sequence alignment