Detailed information    

insolico Bioinformatically predicted

Overview


Name   comQ   Type   Regulator
Locus tag   GII88_RS17575 Genome accession   NZ_CP045814
Coordinates   3345478..3346347 (-) Length   289 a.a.
NCBI ID   WP_011198252.1    Uniprot ID   Q8VQ63
Organism   Bacillus licheniformis strain P8_B2     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 3340478..3351347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII88_RS17540 (GII88_17540) - 3340649..3341125 (+) 477 WP_003184840.1 Na+/H+ antiporter subunit E -
  GII88_RS17545 (GII88_17545) - 3341125..3341409 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  GII88_RS17550 (GII88_17550) mnhG 3341393..3341767 (+) 375 WP_003184844.1 monovalent cation/H(+) antiporter subunit G -
  GII88_RS17555 (GII88_17555) - 3341807..3342196 (-) 390 WP_003184847.1 hotdog fold thioesterase -
  GII88_RS17560 (GII88_17560) comA 3342213..3342851 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  GII88_RS17565 (GII88_17565) comP 3342938..3345259 (-) 2322 WP_026080865.1 ATP-binding protein Regulator
  GII88_RS17570 (GII88_17570) comX 3345299..3345463 (-) 165 WP_011198251.1 competence pheromone ComX -
  GII88_RS17575 (GII88_17575) comQ 3345478..3346347 (-) 870 WP_011198252.1 polyprenyl synthetase family protein Regulator
  GII88_RS17580 (GII88_17580) degQ 3346536..3346676 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  GII88_RS17590 (GII88_17590) - 3347162..3347509 (+) 348 WP_009329512.1 hypothetical protein -
  GII88_RS17595 (GII88_17595) - 3347552..3348772 (-) 1221 WP_003184864.1 HDOD domain-containing protein -
  GII88_RS17600 (GII88_17600) - 3348951..3350420 (-) 1470 WP_003184866.1 nicotinate phosphoribosyltransferase -
  GII88_RS17605 (GII88_17605) - 3350438..3350989 (-) 552 WP_003184868.1 isochorismatase family cysteine hydrolase -

Sequence


Protein


Download         Length: 289 a.a.        Molecular weight: 32743.41 Da        Isoelectric Point: 4.6799

>NTDB_id=346553 GII88_RS17575 WP_011198252.1 3345478..3346347(-) (comQ) [Bacillus licheniformis strain P8_B2]
MNHFIDLEIPNADLNRTLHAFLDAKDQLHFSELAFYHYQSFGGTDTDAAETLGAGIELLILAFDIFDDLEDEDSPDEPWM
KINRSVAMNAATALYTISIKVIGSVSKEPVFFEKLMEYTLQSMQGQHDDLSNRPATEDECLDMIKRKSGALTALPCVLGA
MLATGKFDPTVEKYAYQLGIASQIENDYKALFYDSKSDIAKKKRTLAYLYLSRKFNQPSIDLLKTFETEDKIADKEIKCY
KEKLKAAGVTQYMYVMNQLAIQKFKKGIGELELGDMEKERLMSTLLNNN

Nucleotide


Download         Length: 870 bp        

>NTDB_id=346553 GII88_RS17575 WP_011198252.1 3345478..3346347(-) (comQ) [Bacillus licheniformis strain P8_B2]
ATGAATCATTTTATAGACCTTGAGATTCCCAATGCGGACTTAAATCGGACGCTGCACGCTTTTCTAGATGCAAAGGACCA
GTTGCATTTCAGCGAGCTTGCTTTTTATCATTACCAAAGTTTCGGCGGCACGGACACCGATGCGGCAGAAACCCTTGGAG
CAGGCATTGAACTCTTGATTCTTGCGTTTGATATATTCGATGATTTAGAGGATGAAGACAGCCCCGATGAACCTTGGATG
AAAATCAACCGTTCAGTCGCAATGAATGCGGCGACTGCGCTTTATACAATAAGCATTAAAGTGATCGGTTCGGTGTCGAA
AGAACCGGTGTTTTTCGAAAAGCTAATGGAATATACACTTCAATCGATGCAGGGACAGCATGACGATCTCAGCAACCGCC
CTGCCACTGAAGATGAGTGCCTTGACATGATCAAGCGTAAATCCGGGGCGCTGACAGCCTTGCCATGCGTGCTGGGAGCT
ATGCTTGCTACGGGCAAATTTGACCCGACGGTTGAAAAGTACGCCTACCAGCTGGGCATTGCTTCACAAATTGAAAATGA
TTATAAAGCACTTTTTTATGATTCAAAAAGCGATATCGCCAAGAAAAAGCGGACGCTTGCGTATTTATATTTGTCAAGAA
AATTTAACCAGCCGTCGATTGATTTGTTAAAAACATTTGAAACTGAGGATAAAATTGCCGATAAAGAAATAAAATGCTAT
AAAGAGAAATTGAAGGCAGCAGGCGTCACTCAGTATATGTATGTTATGAATCAGCTCGCTATTCAGAAATTTAAGAAGGG
AATCGGGGAGCTTGAGTTGGGGGATATGGAGAAAGAACGTTTGATGTCTACCCTGCTGAATAACAATTAA

Domains


Predicted by InterProScan.

(41-227)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q8VQ63

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45.361

100

0.457