Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   EXW59_RS30905 Genome accession   NZ_CP036084
Coordinates   5089910..5091259 (-) Length   449 a.a.
NCBI ID   WP_215560514.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS1004     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5084910..5096259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW59_RS30870 (EXW59_31555) - 5085046..5085741 (-) 696 WP_215560080.1 hypothetical protein -
  EXW59_RS30875 (EXW59_31560) - 5085728..5086516 (-) 789 WP_215560081.1 hypothetical protein -
  EXW59_RS30880 (EXW59_31565) - 5086548..5087117 (-) 570 WP_215560082.1 hypothetical protein -
  EXW59_RS30885 (EXW59_31570) - 5087236..5087730 (-) 495 WP_215560083.1 hypothetical protein -
  EXW59_RS30890 (EXW59_31575) raiA 5088019..5088561 (-) 543 WP_002089603.1 ribosome-associated translation inhibitor RaiA -
  EXW59_RS30895 (EXW59_31580) cspC 5088882..5089079 (-) 198 WP_001990088.1 cold shock protein CspC -
  EXW59_RS30900 (EXW59_31585) - 5089206..5089910 (-) 705 WP_002129929.1 ComF family protein -
  EXW59_RS30905 (EXW59_31590) comFA 5089910..5091259 (-) 1350 WP_215560514.1 ATP-dependent helicase ComFA Machinery gene
  EXW59_RS30910 (EXW59_31595) - 5091390..5092706 (-) 1317 WP_215560084.1 C40 family peptidase -
  EXW59_RS30915 (EXW59_31600) - 5092971..5093285 (-) 315 WP_002089608.1 helix-turn-helix domain-containing protein -
  EXW59_RS30920 (EXW59_31605) - 5093459..5094301 (-) 843 WP_215560085.1 DegV family protein -
  EXW59_RS30925 (EXW59_31610) - 5094693..5095328 (+) 636 WP_002034752.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50884.39 Da        Isoelectric Point: 9.6777

>NTDB_id=346552 EXW59_RS30905 WP_215560514.1 5089910..5091259(-) (comFA) [Bacillus mycoides strain JAS1004]
MLAGRQLLLEELSSDLQNKLDHLKKNRDVVCVQGVIKKSSKYMCQRCGNIEQRLFVSLLCKRCNEVCTYCRKCITMGRVS
ECTVLVRGIAEISGESYLNPLQWEGVLSDGQELAAQSVVDAVKQKESFFIWAVCGAGKTEMLFRGIAEALQKGERVCIAT
PRTDVVLELAPRLQEVFPNIKVAALYGGSLDREKDAALIVATTHQLLRYYRAFHVMIVDEIDAFPYHADKMLRYAVSEAM
KEKAARIYLTATPDEKWKRKLRSGKQKGVIISGRYHRHPLPVPIFRWCGNWKKGLIRKKIPRALLQWLNLYLSKRYPIFL
FVPHVRYVEEISQLLKSLNNQIDGVHAEDPARKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSSDEPHGDVIYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=346552 EXW59_RS30905 WP_215560514.1 5089910..5091259(-) (comFA) [Bacillus mycoides strain JAS1004]
ATGTTAGCTGGTAGACAGTTACTGTTAGAAGAACTCTCTTCAGATTTGCAGAATAAATTGGATCATTTGAAAAAGAATCG
AGACGTCGTTTGTGTGCAAGGGGTAATTAAGAAATCTTCAAAATATATGTGTCAGCGCTGCGGAAATATAGAGCAGCGAC
TATTTGTATCATTGCTATGTAAAAGGTGCAATGAAGTATGTACGTATTGCCGGAAATGTATAACGATGGGCAGGGTAAGT
GAATGTACTGTACTTGTTCGCGGGATTGCTGAAATAAGCGGAGAAAGTTATTTGAATCCGTTACAGTGGGAAGGCGTTTT
GTCTGACGGTCAGGAGTTAGCTGCGCAAAGTGTCGTTGACGCTGTTAAGCAGAAAGAATCATTTTTTATTTGGGCGGTGT
GCGGGGCTGGAAAAACAGAAATGTTGTTTCGCGGAATTGCAGAGGCACTGCAAAAGGGAGAAAGAGTTTGTATTGCAACG
CCGAGAACGGACGTTGTACTTGAATTAGCACCAAGATTACAAGAAGTGTTTCCAAATATAAAGGTAGCTGCTTTATACGG
AGGGAGTTTAGACCGAGAAAAAGATGCGGCGTTAATCGTTGCAACTACACATCAATTGTTACGTTATTATAGGGCGTTCC
ATGTCATGATTGTAGATGAGATAGATGCTTTTCCGTATCATGCAGATAAGATGTTGCGGTATGCAGTAAGCGAAGCGATG
AAAGAGAAGGCAGCACGTATTTATTTAACTGCAACTCCAGATGAAAAGTGGAAGCGTAAGTTGCGAAGTGGTAAGCAAAA
AGGGGTTATTATTTCAGGGCGATACCATCGCCATCCATTGCCAGTTCCGATATTTCGGTGGTGCGGAAATTGGAAAAAGG
GTCTTATACGTAAAAAAATTCCTCGTGCTTTATTACAATGGTTAAATCTGTACTTATCGAAACGATACCCCATTTTTTTA
TTTGTTCCTCATGTGCGATATGTAGAAGAAATTAGCCAGTTATTAAAATCATTAAACAATCAAATTGACGGTGTGCATGC
AGAAGATCCGGCGAGAAAAGAGAAGGTAGCAGCTTTCAGAAAAGGAGAAATCCCTTTATTAGTTACAACGACGATTTTGG
AACGAGGAGTAACTGTGAAAAATTTACAAGTTGCAGTTTTAGGAGCTGAGGAAGAAATATTTTCAGAAAGTGCTCTCGTT
CAAATTGCAGGGCGTGCTGGCAGAAGCTCTGATGAACCGCATGGAGATGTTATCTATTTTCATTATGGAAAGACAGAGGC
GATGGTGCGTGCGAAAAAACATATTCAAAGTATGAATAAGAATGCTAAAGAACAAGGACTGATAGATTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(313-409)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.34

98.218

0.494
  comFA Latilactobacillus sakei subsp. sakei 23K

41.206

88.641

0.365

Multiple sequence alignment