Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   EXW59_RS30660 Genome accession   NZ_CP036084
Coordinates   5044509..5045090 (+) Length   193 a.a.
NCBI ID   WP_001049163.1    Uniprot ID   A0A366GQ86
Organism   Bacillus mycoides strain JAS1004     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5039509..5050090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW59_RS30625 (EXW59_31295) - 5040492..5040698 (+) 207 WP_000216167.1 DUF1657 domain-containing protein -
  EXW59_RS30630 (EXW59_31300) - 5040805..5041293 (+) 489 WP_040963136.1 YhcN/YlaJ family sporulation lipoprotein -
  EXW59_RS30635 (EXW59_31305) spoVAC 5041322..5041798 (+) 477 WP_002034730.1 stage V sporulation protein AC -
  EXW59_RS30640 (EXW59_31310) spoVAD 5041799..5042815 (+) 1017 WP_000938981.1 stage V sporulation protein AD -
  EXW59_RS30645 (EXW59_31315) spoVAE 5042812..5043162 (+) 351 WP_000575919.1 stage V sporulation protein AE -
  EXW59_RS30650 (EXW59_31320) - 5043172..5043378 (+) 207 WP_002034728.1 DUF1657 domain-containing protein -
  EXW59_RS30655 (EXW59_31325) - 5043399..5044268 (+) 870 WP_002016080.1 DUF421 domain-containing protein -
  EXW59_RS30660 (EXW59_31330) clpP 5044509..5045090 (+) 582 WP_001049163.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  EXW59_RS30665 (EXW59_31335) - 5045419..5045667 (-) 249 WP_215560076.1 HPr family phosphocarrier protein -
  EXW59_RS30670 (EXW59_31340) whiA 5045691..5046641 (-) 951 WP_002016082.1 DNA-binding protein WhiA -
  EXW59_RS30675 (EXW59_31345) - 5046730..5047683 (-) 954 WP_002016083.1 YvcK family protein -
  EXW59_RS30680 (EXW59_31350) rapZ 5047687..5048568 (-) 882 WP_002016084.1 RNase adapter RapZ -
  EXW59_RS30685 (EXW59_31355) - 5048589..5049047 (-) 459 WP_002124062.1 8-oxo-dGTP diphosphatase -
  EXW59_RS30690 (EXW59_31360) - 5049263..5050069 (-) 807 WP_061673727.1 DUF368 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21447.68 Da        Isoelectric Point: 5.0423

>NTDB_id=346551 EXW59_RS30660 WP_001049163.1 5044509..5045090(+) (clpP) [Bacillus mycoides strain JAS1004]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAERALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=346551 EXW59_RS30660 WP_001049163.1 5044509..5045090(+) (clpP) [Bacillus mycoides strain JAS1004]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAGGA
TCGCATCATTATGCTTGGTAGCGCAATTGATGACAATGTAGCAAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGAAAAAGATATTCACATTTACATCAACAGCCCTGGTGGTTCTATCACAGCTGGTATGGCAATTTACGATACA
ATGCAGTTTATTAAACCACAAGTATCAACAATCTGTATCGGTATGGCTGCATCTATGGGTGCATTCTTACTTGCAGCAGG
TGAAAAAGGAAAACGTTACGCACTTCCAAACAGTGAAGTTATGATTCACCAACCACTTGGCGGAGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCAAAACGTATCCTATTCTTACGTGAAAAATTAAACCAAATTCTTGCTGACCGCACAGGTCAA
CCACTTGAAGTTCTACAACGCGACACAGACCGCGACAACTTCATGACAGCAGAAAGAGCTCTAGAATACGGCTTAATCGA
TAAGATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GQ86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.104

99.482

0.896
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.021

97.409

0.653
  clpP Streptococcus thermophilus LMG 18311

60.417

99.482

0.601
  clpP Streptococcus thermophilus LMD-9

60.417

99.482

0.601
  clpP Lactococcus lactis subsp. cremoris KW2

58.854

99.482

0.585
  clpP Streptococcus pneumoniae D39

57.292

99.482

0.57
  clpP Streptococcus pneumoniae Rx1

57.292

99.482

0.57
  clpP Streptococcus pneumoniae R6

57.292

99.482

0.57
  clpP Streptococcus pneumoniae TIGR4

57.292

99.482

0.57
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56.771

99.482

0.565
  clpP Streptococcus pyogenes JRS4

55.729

99.482

0.554
  clpP Streptococcus pyogenes MGAS315

55.729

99.482

0.554
  clpP Streptococcus mutans UA159

55.44

100

0.554

Multiple sequence alignment