Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   GII88_RS08860 Genome accession   NZ_CP045814
Coordinates   1733774..1735822 (+) Length   682 a.a.
NCBI ID   WP_009328528.1    Uniprot ID   Q65JR1
Organism   Bacillus licheniformis strain P8_B2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1728774..1740822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII88_RS08830 (GII88_08830) spoVM 1729321..1729401 (+) 81 WP_003221545.1 stage V sporulation protein SpoVM -
  GII88_RS08835 (GII88_08835) rpmB 1729506..1729694 (-) 189 WP_003181685.1 50S ribosomal protein L28 -
  GII88_RS08840 (GII88_08840) - 1729982..1730344 (+) 363 WP_003181687.1 Asp23/Gls24 family envelope stress response protein -
  GII88_RS08845 (GII88_08845) - 1730362..1732032 (+) 1671 WP_026699222.1 DAK2 domain-containing protein -
  GII88_RS08850 (GII88_08850) sdaAB 1732213..1732875 (+) 663 WP_003181691.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  GII88_RS08855 (GII88_08855) sdaAA 1732894..1733796 (+) 903 WP_009328529.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  GII88_RS08860 (GII88_08860) recG 1733774..1735822 (+) 2049 WP_009328528.1 ATP-dependent DNA helicase RecG Machinery gene
  GII88_RS08865 (GII88_08865) fapR 1735939..1736505 (+) 567 WP_003181698.1 transcription factor FapR -
  GII88_RS08870 (GII88_08870) plsX 1736523..1737515 (+) 993 WP_003181700.1 phosphate acyltransferase PlsX -
  GII88_RS08875 (GII88_08875) fabD 1737533..1738492 (+) 960 WP_003181702.1 ACP S-malonyltransferase -
  GII88_RS08880 (GII88_08880) fabG 1738479..1739222 (+) 744 WP_003181704.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  GII88_RS08885 (GII88_08885) acpP 1739299..1739532 (+) 234 WP_003181706.1 acyl carrier protein -
  GII88_RS08890 (GII88_08890) rnc 1739674..1740423 (+) 750 WP_009328527.1 ribonuclease III -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 77627.13 Da        Isoelectric Point: 7.3550

>NTDB_id=346492 GII88_RS08860 WP_009328528.1 1733774..1735822(+) (recG) [Bacillus licheniformis strain P8_B2]
MEHNLQLSISVIKGVGTETEKTLNELGIYTVLDLLNYFPYRYDDYELRDLEDVAHDERVTVEGKVHSEPSLAYYGKKRSR
LTFRLLVGNYLITAVCFNRPYLKKKLAIGSIVTVTGKWDKHRQSVMVQELKNGPHQGDQSIEPVYSVKENITVKTMRKLI
QEAVRSHLPFAEDPLPEKLRTAYKLLSYQEAVKAMHKPESREALKHARRRFVYEEFLLFQLKMQALRKFEREASDGISHT
FRLEDVNSFVKSLPFPLTNAQAKALDDILRDMASGYKMNRLLQGDVGSGKTAVAAIALYASLLSGFQGAMMVPTEILAEQ
HADSLVSLFEQHDVNVALLTSSVKGKRRRELLERLKEGEIDILVGTHALIQDDVHFKQLGLVITDEQHRFGVEQRKKLRS
KGKDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKRIETYWVKHDMLERILAFIDKELKKGRQAYVICPLIEESD
KLDVQNAIDVHSMLTHAFRGRWQIGLMHGKLSNDEKEQVMRQFSKNECQILVSTTVVEVGVNVPNATVMLIYDADRFGLS
QLHQLRGRVGRGDHQSYCILMADPKSETGKERMSIMSETTDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRA
LETARRDAAELVSSKAFWTDAEYKSLREHLQNSGVMDGEKLS

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=346492 GII88_RS08860 WP_009328528.1 1733774..1735822(+) (recG) [Bacillus licheniformis strain P8_B2]
GTGGAACACAATCTGCAACTTAGTATATCTGTTATAAAAGGCGTCGGGACGGAAACGGAAAAAACGTTGAACGAGCTCGG
AATCTATACGGTTCTCGATCTTTTAAACTACTTCCCGTACCGATATGACGATTATGAATTGCGCGATTTGGAAGATGTGG
CACACGATGAACGAGTGACGGTGGAAGGGAAGGTTCACAGCGAGCCTTCTCTTGCCTATTACGGGAAAAAGCGGAGCCGT
CTCACGTTCCGGCTTTTGGTCGGGAACTATTTGATCACAGCGGTTTGCTTTAACAGGCCTTATTTGAAAAAAAAGCTTGC
GATCGGCTCGATTGTTACCGTAACCGGAAAATGGGACAAGCACAGACAATCCGTGATGGTGCAAGAGCTGAAAAACGGGC
CGCACCAGGGTGATCAGTCGATTGAACCCGTATACTCCGTCAAAGAAAACATCACCGTAAAGACGATGAGGAAATTGATT
CAGGAAGCTGTCCGCAGCCATTTGCCGTTTGCCGAAGATCCTCTTCCGGAAAAGCTTCGGACCGCCTACAAACTTCTGTC
TTACCAGGAGGCGGTAAAGGCGATGCACAAGCCCGAGTCGAGGGAAGCTTTAAAGCATGCGCGGCGCCGTTTTGTATATG
AGGAATTTTTGCTGTTTCAGCTGAAAATGCAGGCTTTGCGAAAGTTCGAGCGGGAAGCGTCCGACGGAATCAGCCACACC
TTTCGGCTCGAAGACGTCAATTCGTTTGTCAAAAGCCTTCCGTTTCCTTTGACAAACGCGCAGGCGAAAGCGCTCGACGA
CATATTAAGGGACATGGCTTCAGGGTATAAAATGAATCGGCTTTTGCAAGGAGACGTCGGTTCAGGCAAAACAGCCGTCG
CCGCGATTGCGCTATACGCCTCGCTGCTTTCCGGATTCCAGGGGGCGATGATGGTGCCGACCGAAATACTGGCGGAACAG
CACGCCGATTCGCTTGTATCCCTCTTTGAGCAGCACGACGTCAATGTGGCGCTTTTAACAAGCTCTGTGAAAGGGAAAAG
GAGAAGAGAGCTTTTAGAAAGATTAAAAGAAGGAGAAATTGATATTTTGGTGGGGACGCACGCCCTTATTCAGGACGATG
TCCACTTTAAACAGCTCGGGCTCGTGATCACCGATGAACAGCACCGCTTCGGCGTCGAGCAAAGAAAAAAACTGAGAAGC
AAAGGGAAAGATCCCGATGTCTTGTTTATGACGGCGACGCCGATTCCGAGAACACTGGCGATCACGGTTTTCGGGGAAAT
GGATGTGTCCGTCATCGATGAAATGCCGGCTGGGCGAAAGCGGATCGAGACGTATTGGGTAAAGCACGACATGCTCGAAC
GGATTCTCGCGTTTATCGATAAAGAACTGAAAAAAGGCAGACAGGCGTATGTGATCTGTCCCTTGATTGAAGAGTCGGAC
AAGCTCGACGTTCAAAATGCAATTGATGTGCACAGCATGCTGACTCATGCCTTCAGGGGAAGATGGCAGATCGGTCTCAT
GCACGGAAAGCTGTCAAATGACGAGAAAGAACAGGTAATGAGGCAGTTCAGCAAAAACGAATGCCAGATTCTCGTTTCCA
CAACCGTCGTTGAAGTCGGGGTAAACGTTCCGAATGCGACGGTCATGCTGATCTATGATGCCGACCGGTTCGGTCTTTCC
CAGCTGCATCAGCTTCGCGGCCGGGTCGGACGGGGCGATCACCAGTCGTATTGCATCCTGATGGCAGACCCGAAATCTGA
GACGGGAAAAGAGCGCATGAGCATCATGTCTGAGACGACGGACGGCTTTGAGCTTTCTGAAAAAGATCTTGAACTCAGAG
GGCCCGGGGACTTTTTCGGCAAGAAACAGAGCGGGATGCCGGAGTTTAAAGTCGCCGACATGGTTCACGACTACCGCGCG
CTGGAAACGGCAAGAAGAGACGCTGCAGAACTTGTCTCTTCAAAAGCGTTCTGGACGGATGCCGAATATAAAAGCCTGCG
GGAACACTTGCAAAACAGCGGGGTTATGGACGGAGAGAAGCTGAGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(452-572)

RecG wedge domain (RecG_wedge)

(9-164)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(599-672)

DEAD/DEAH box helicase (DEAD)

(258-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65JR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

81.085

100

0.811
  recG/mmsA Streptococcus pneumoniae R6

49.185

98.974

0.487
  recG/mmsA Streptococcus pneumoniae R36A

49.185

98.974

0.487
  recG Neisseria meningitidis strain C311

39.445

95.161

0.375