Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   EXW41_RS20725 Genome accession   NZ_CP036070
Coordinates   4081776..4082819 (-) Length   347 a.a.
NCBI ID   WP_088064407.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain JAS07/5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4076776..4087819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW41_RS20680 (EXW41_20915) - 4077206..4077406 (-) 201 WP_000106081.1 YqzE family protein -
  EXW41_RS20685 (EXW41_20920) - 4077445..4077942 (-) 498 WP_088064403.1 shikimate kinase -
  EXW41_RS20690 (EXW41_20925) - 4078061..4078711 (-) 651 WP_046957539.1 2OG-Fe(II) oxygenase -
  EXW41_RS20695 (EXW41_20930) comGG 4078886..4079257 (-) 372 WP_046956345.1 competence type IV pilus minor pilin ComGG -
  EXW41_RS20700 (EXW41_20935) comGF 4079254..4079724 (-) 471 WP_098082024.1 competence type IV pilus minor pilin ComGF -
  EXW41_RS20705 (EXW41_20940) - 4079694..4079996 (-) 303 WP_097889617.1 competence protein ComG -
  EXW41_RS20710 (EXW41_20945) comGD 4079989..4080444 (-) 456 WP_000810391.1 comG operon protein ComGD -
  EXW41_RS20715 (EXW41_20950) comGC 4080441..4080740 (-) 300 WP_088064405.1 competence type IV pilus major pilin ComGC -
  EXW41_RS20720 (EXW41_20955) comGB 4080752..4081783 (-) 1032 WP_088064406.1 competence type IV pilus assembly protein ComGB -
  EXW41_RS20725 (EXW41_20960) comGA 4081776..4082819 (-) 1044 WP_088064407.1 competence protein ComGA Machinery gene
  EXW41_RS20730 (EXW41_20965) - 4083025..4083720 (+) 696 WP_000434122.1 helix-turn-helix domain-containing protein -
  EXW41_RS20735 (EXW41_20970) - 4083846..4084088 (+) 243 WP_000440719.1 DUF2626 domain-containing protein -
  EXW41_RS20740 (EXW41_20975) - 4084195..4085589 (+) 1395 WP_048562307.1 L-cystine transporter -
  EXW41_RS20745 (EXW41_20980) - 4085806..4086021 (-) 216 WP_001008334.1 DUF3912 family protein -
  EXW41_RS20750 (EXW41_20985) - 4086276..4086587 (+) 312 WP_001093232.1 hypothetical protein -
  EXW41_RS20755 (EXW41_20990) - 4086626..4087114 (-) 489 WP_000764275.1 hypothetical protein -
  EXW41_RS20760 (EXW41_20995) - 4087194..4087568 (-) 375 WP_001012499.1 nucleoside 2-deoxyribosyltransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39295.84 Da        Isoelectric Point: 8.9017

>NTDB_id=346442 EXW41_RS20725 WP_088064407.1 4081776..4082819(-) (comGA) [Bacillus wiedmannii strain JAS07/5]
MNGIEIFANTILKEACRVQASDLHIVPRKKDVAVQLRIGKDLMTKHCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTVKKLLSFLHYSHGLLVFTGPTGSGKTTTMYALLEV
IKKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDIILVGEIRDEETAKIAIRASLTGHLVMTTLH
TSDAKGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCQRKCSTLCKSMRQVRQASIYELLYGYELKQAIKEANGEC
VTYKHETLESSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=346442 EXW41_RS20725 WP_088064407.1 4081776..4082819(-) (comGA) [Bacillus wiedmannii strain JAS07/5]
ATGAATGGAATTGAAATTTTTGCGAATACGATTTTGAAAGAGGCGTGCAGGGTACAAGCTTCGGATTTACATATTGTGCC
CCGGAAGAAGGATGTAGCGGTTCAACTGCGTATAGGAAAAGATTTAATGACGAAACACTGTATCGAAAAGGAATTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCCATGGATATAGGGGAGAGACGGAAGCCACAAAATGGTTCACTGTAT
TTACAAATGGATGGACAAGAAGTGTATTTACGCCTTTCCACGCTTCCAACCGTATACCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGTGAAAAAACTACTCTCTTTTTTAC
ACTATTCACATGGGTTACTCGTATTTACTGGACCGACTGGTTCGGGGAAGACAACAACAATGTATGCATTATTAGAGGTA
ATTAAAAAAAAGAAAACACGTCGCATCGTTACACTTGAAGATCCAGTTGAAAAAAGAAATGACGATGTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCGGGACTAAAGGCCATTTTACGTCATGATCCAGATATTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCGAAAATCGCTATAAGAGCAAGTTTGACTGGACATTTAGTAATGACGACACTGCAT
ACTAGTGATGCGAAAGGGGCGATACTCCGATTTATGGATTTCGGTATAACGAGGCAAGAGATTGAACAATCTTTATTGGC
TATAGCTGCACAGCGACTTGTCGAATTGAAATGTCCGTTTTGCCAAAGAAAGTGCTCAACTTTATGTAAATCAATGAGGC
AGGTAAGACAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCAATTAAAGAAGCAAACGGGGAATGT
GTCACGTACAAGCACGAAACATTAGAATCTTCGATACGAAAAGGATACGCTTTAGGATTTTTAGAAGAGGATGTGTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

58.501

100

0.585

Multiple sequence alignment