Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EXW41_RS20990 Genome accession   NZ_CP036070
Coordinates   4134240..4134986 (-) Length   248 a.a.
NCBI ID   WP_000487012.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain JAS07/5     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4129240..4139986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW41_RS20970 (EXW41_21205) dnaG 4130010..4131806 (-) 1797 WP_000528234.1 DNA primase -
  EXW41_RS20975 - 4131889..4132020 (-) 132 WP_002008547.1 hypothetical protein -
  EXW41_RS20980 (EXW41_21210) - 4132658..4133470 (-) 813 WP_000368941.1 pyruvate, water dikinase regulatory protein -
  EXW41_RS20985 (EXW41_21215) - 4133500..4134132 (-) 633 WP_002077328.1 helix-turn-helix transcriptional regulator -
  EXW41_RS20990 (EXW41_21220) recO 4134240..4134986 (-) 747 WP_000487012.1 DNA repair protein RecO Machinery gene
  EXW41_RS20995 (EXW41_21225) - 4135020..4135163 (-) 144 WP_000883924.1 YqzL family protein -
  EXW41_RS21000 (EXW41_21230) era 4135340..4136245 (-) 906 WP_001080239.1 GTPase Era -
  EXW41_RS21005 (EXW41_21235) - 4136238..4136636 (-) 399 WP_001086294.1 cytidine deaminase -
  EXW41_RS21010 (EXW41_21240) - 4136736..4137089 (-) 354 WP_000715485.1 diacylglycerol kinase family protein -
  EXW41_RS21015 (EXW41_21245) ybeY 4137086..4137556 (-) 471 WP_088064428.1 rRNA maturation RNase YbeY -
  EXW41_RS21020 (EXW41_21250) - 4137553..4139697 (-) 2145 WP_048541521.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28632.15 Da        Isoelectric Point: 8.0462

>NTDB_id=346443 EXW41_RS20990 WP_000487012.1 4134240..4134986(-) (recO) [Bacillus wiedmannii strain JAS07/5]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGNFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDSEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=346443 EXW41_RS20990 WP_000487012.1 4134240..4134986(-) (recO) [Bacillus wiedmannii strain JAS07/5]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGCCGGTTAGCATCTGTTTCGCAACTTATGA
CCCATGGTAATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATTCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTCCGGGAAGGCGGTTTTCTGTGCTCGCGTCATGCTGAGCAAGACCAGTATCGTATACCAGTGGG
GGAAGCTGTTCATAAATTATTACGTCTTTTCTACCACTTCGATTTACATAGACTTGGTAATGTATCGGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAGTCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.061

99.597

0.548

Multiple sequence alignment