Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EXW62_RS05740 Genome accession   NZ_CP036034
Coordinates   1119924..1121750 (+) Length   608 a.a.
NCBI ID   WP_215555575.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN57/2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1114924..1126750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW62_RS05720 (EXW62_05860) - 1115135..1115809 (-) 675 WP_215555572.1 TerC family protein -
  EXW62_RS05725 (EXW62_05865) mecA 1116247..1116930 (+) 684 WP_215555573.1 adaptor protein MecA Regulator
  EXW62_RS05730 (EXW62_05870) - 1117003..1118547 (+) 1545 WP_215555574.1 cardiolipin synthase -
  EXW62_RS05735 (EXW62_05875) - 1118638..1119873 (+) 1236 WP_215556569.1 competence protein CoiA family protein -
  EXW62_RS05740 (EXW62_05880) pepF 1119924..1121750 (+) 1827 WP_215555575.1 oligoendopeptidase F Regulator
  EXW62_RS05745 (EXW62_05885) - 1122299..1123192 (-) 894 WP_215555576.1 ClpXP adapter SpxH family protein -
  EXW62_RS05750 (EXW62_05890) - 1123192..1123590 (-) 399 WP_000043388.1 hypothetical protein -
  EXW62_RS05755 (EXW62_05895) - 1123776..1124354 (-) 579 WP_215555577.1 CYTH domain-containing protein -
  EXW62_RS05760 (EXW62_05900) - 1124500..1124871 (+) 372 WP_215555578.1 hypothetical protein -
  EXW62_RS05765 (EXW62_05905) - 1124902..1125540 (+) 639 WP_215555579.1 GTP pyrophosphokinase family protein -
  EXW62_RS05770 (EXW62_05910) - 1125559..1126356 (+) 798 WP_000673196.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70263.59 Da        Isoelectric Point: 4.6706

>NTDB_id=346074 EXW62_RS05740 WP_215555575.1 1119924..1121750(+) (pepF) [Bacillus mycoides strain BPN57/2]
MAEQNTVKSLPNRNEIEEANTWRLEDIFQTDAEWDKEFQAIKELLPKLTEFKGKLGDSADNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLQENRELSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVHETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLIESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQEMLLKSLNVLGDEYVEILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAATPDMLTEIYYDLNKKYFGDALVIDKEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=346074 EXW62_RS05740 WP_215555575.1 1119924..1121750(+) (pepF) [Bacillus mycoides strain BPN57/2]
ATGGCTGAACAAAATACAGTAAAATCATTACCAAATCGCAATGAGATTGAAGAAGCAAACACATGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGACAAAGAATTCCAAGCTATTAAAGAGCTATTGCCAAAGTTAACTGAATTTAAAGGGA
AGCTTGGCGACTCTGCAGACAATTTGCTTGAGGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCATTAAATGATCGCGCAACAAATTTATA
CTCACAAGTATCTAGTAGCACAGCTTATATCGTACCTGAAATTTTATCTATTTCAGAAGATACATTGCAAACTTTCTTAC
AAGAAAATCGAGAACTAAGTGTATATGAGCATGCATTAGAAGAAATTACACGTCAACGCCCGCACGTATTATCTGAGGCA
GAAGAAGCGTTATTAGCAGAAGCATCTGAAGTGATGAGTGCATCAAGTAATACATTCGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAGGTAGAAATAACACATGGTCGTTACATTCAATTTTTAGAAAGTG
ATGATCGTCGTGTACGCGAAGATGCATTCAAAGCTGTACATGAAACATACGGGAAATATAAGAACACATTTGCAAGTACG
CTAAGCGGGGCTGTGAAACGTAATAATTTCAATGCACGCGTTCGTAAATACGATTCTGCACGTCAAGCTGCATTAAGTAA
TAATAATATTCCTGAGGCGGTGTATGATCAACTTATTGAATCGGTAAATGATAATTTACACTTACTACATCGATACATTG
ATATTCGTAAGCGTGCTCTAGGTCTTGATGAGCTTCATATGTACGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AATGTGAAGTATGAAGAAGCGCAAGAAATGTTATTGAAATCTTTAAATGTACTTGGTGATGAATATGTTGAAATTTTAAA
AGAAGCATATGAAAATCGCTGGGTAGATGTATATGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCATACG
GAACAAATCCGTATATTTTAATGAATTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAGTTTGGTCATTCA
GTGCATAGTTACTATACAAGGAAGACACAACCGCACGTATATGGTGATTATTCAATCTTCGTTGCAGAAGTAGCATCAAC
TTGTAATGAAGCGCTTCTAAATGATTACTTATTGAAGACGACAGAAGATAAGAAAGAGCGTCTATATTTATTAAATCACT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACAATGTTTGCAGAGTTCGAGCATATCATTCATAAAAAAGTACAA
GAAGGACATGCGGCTACGCCAGATATGTTAACGGAGATTTACTACGATTTAAATAAGAAATATTTTGGGGACGCTTTAGT
AATCGATAAAGAAATCGGTTTAGAGTGGTCTCGTATTCCGCACTTCTATTACAACTATTATGTATATCAATACGCAACAG
GATTTAGTGCGGCGACAGCTTTATCAAAACAAATTTTAGAAGAGGGACAACCAGCAGTAGAACGTTACATTAACGAATTC
TTAAAAGCTGGAAGCTCTGATTATCCAATTGAAGTGTTGAAAAAAGCAGGAGTAGATATGGCATCGCCAGAACCTGTAAA
AGAAGCATTACAAGTATTTGAAGAGAAGTTAAATGAATTAGAAGCGCTATTGTTTGAAGAGAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.084

97.533

0.488

Multiple sequence alignment