Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GH773_RS07685 Genome accession   NZ_CP045791
Coordinates   1496578..1497126 (+) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain CFSAN032805     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1491578..1502126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH773_RS07645 (GH773_07645) rseP 1491691..1492794 (+) 1104 WP_002799256.1 RIP metalloprotease RseP -
  GH773_RS09335 (GH773_07650) - 1492791..1493042 (+) 252 WP_048813181.1 hypothetical protein -
  GH773_RS09120 - 1493006..1493647 (+) 642 Protein_1490 DUF535 family protein -
  GH773_RS07670 (GH773_07670) - 1493640..1494641 (-) 1002 WP_002780256.1 sugar phosphate isomerase/epimerase -
  GH773_RS07675 (GH773_07675) - 1494641..1495912 (-) 1272 WP_002777080.1 MFS transporter -
  GH773_RS07680 (GH773_07680) rpsF 1496192..1496569 (+) 378 WP_002777082.1 30S ribosomal protein S6 -
  GH773_RS07685 (GH773_07685) ssb 1496578..1497126 (+) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  GH773_RS07690 (GH773_07690) rpsR 1497137..1497397 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  GH773_RS07695 (GH773_07695) lon 1497453..1499828 (-) 2376 WP_057040100.1 endopeptidase La -
  GH773_RS07700 (GH773_07700) - 1499844..1500491 (-) 648 WP_002777091.1 outer membrane protein assembly factor BamD -
  GH773_RS07705 (GH773_07705) fliW 1500655..1501044 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  GH773_RS07710 (GH773_07710) proC 1501044..1501781 (+) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  GH773_RS07715 (GH773_07715) ctsT 1501778..1502083 (+) 306 WP_002790525.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=346023 GH773_RS07685 WP_002777084.1 1496578..1497126(+) (ssb) [Campylobacter coli strain CFSAN032805]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=346023 GH773_RS07685 WP_002777084.1 1496578..1497126(+) (ssb) [Campylobacter coli strain CFSAN032805]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCGGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379