Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EXW38_RS06325 Genome accession   NZ_CP036026
Coordinates   1205432..1207258 (+) Length   608 a.a.
NCBI ID   WP_215572538.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN54/2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1200432..1212258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW38_RS06305 (EXW38_06410) - 1200643..1201317 (-) 675 WP_131229705.1 TerC family protein -
  EXW38_RS06310 (EXW38_06415) mecA 1201755..1202438 (+) 684 WP_002158885.1 adaptor protein MecA Regulator
  EXW38_RS06315 (EXW38_06420) - 1202511..1204055 (+) 1545 WP_131229706.1 cardiolipin synthase -
  EXW38_RS06320 (EXW38_06425) - 1204146..1205381 (+) 1236 WP_215572926.1 competence protein CoiA -
  EXW38_RS06325 (EXW38_06430) pepF 1205432..1207258 (+) 1827 WP_215572538.1 oligoendopeptidase F Regulator
  EXW38_RS06330 (EXW38_06435) - 1207808..1208701 (-) 894 WP_002158882.1 ClpXP adapter SpxH family protein -
  EXW38_RS06335 (EXW38_06440) - 1208701..1209099 (-) 399 WP_000043388.1 hypothetical protein -
  EXW38_RS06340 (EXW38_06445) - 1209284..1209862 (-) 579 WP_215572539.1 CYTH domain-containing protein -
  EXW38_RS06345 (EXW38_06450) - 1210007..1210378 (+) 372 WP_002149812.1 hypothetical protein -
  EXW38_RS06350 (EXW38_06455) - 1210409..1211047 (+) 639 WP_002158880.1 GTP pyrophosphokinase family protein -
  EXW38_RS06355 (EXW38_06460) - 1211066..1211863 (+) 798 WP_000673196.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70292.71 Da        Isoelectric Point: 4.6458

>NTDB_id=346025 EXW38_RS06325 WP_215572538.1 1205432..1207258(+) (pepF) [Bacillus mycoides strain BPN54/2]
MAEKNTVKSLPNRNEIEEATTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSADNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLQENRELSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGTYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLIESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
TVKYEEAQEMLLKSLNVLGDEYIEILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDKEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=346025 EXW38_RS06325 WP_215572538.1 1205432..1207258(+) (pepF) [Bacillus mycoides strain BPN54/2]
ATGGCTGAAAAAAATACAGTAAAATCATTACCAAATCGCAATGAGATTGAAGAAGCAACCACATGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAAGAGCTATTGCCAAAGTTAACTGAATTTAAAGGAA
AGCTTGGCGACTCTGCAGACAATTTGCTTGAGGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCATTAAATGATCGCGCAACAAATTTATA
CTCACAAGTATCTAGTAGCACAGCTTATATCGTACCTGAAATTTTATCTATTTCAGAAGATACATTGCAAACTTTCTTGC
AAGAAAATCGAGAACTAAGTGTATATGAGCATGCATTAGAAGAAATTACACGTCAACGCCCGCACGTATTATCTGAGGCA
GAAGAAGCGTTATTAGCAGAAGCATCTGAAGTGATGAGTGCATCAAGTAATACATTCGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAGGTAGAAATAACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTGCGTGAAGATGCATTCAAAGCTGTATATGAAACATACGGAACATATAAGAACACATTTGCAAGTACG
CTAAGCGGGGCTGTGAAACGTAATAATTTCAATGCACGCGTTCGTAAATACGATTCTGCACGTCAAGCTGCATTAAGTAA
TAATAATATTCCTGAGGCGGTGTATGATCAACTTATTGAATCGGTAAATGATAATTTACACTTACTACATCGATACATTG
ATATTCGTAAGCGTGCCCTAGGTCTTGATGAGCTTCATATGTACGATTTATATACACCACTTGTACCAGAAGTGAAAATG
ACTGTGAAGTATGAAGAAGCGCAAGAAATGTTATTGAAATCTTTAAATGTACTTGGTGATGAATATATTGAAATTTTAAA
AGAAGCATATGAAAATCGCTGGGTAGATGTATACGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCATACG
GAACAAATCCATATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAGTTTGGTCATTCA
GTGCATAGTTACTATACAAGGAAGACACAACCGCACGTATATGGTGATTATTCAATCTTCGTTGCAGAAGTAGCTTCAAC
TTGTAATGAAGCGCTTCTAAATGATTACTTATTGAAGACGACAGAAGATAAGAAAGAGCGTCTATATTTATTAAATCACT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACAATGTTTGCAGAGTTCGAGCATATCATTCATAAAAAAGTACAA
GAAGGACATGCTGTTACGCCAGATATGTTAACGGAGATTTACTACGATTTAAATAAGAAATATTTCGGGGACGCTTTAGT
AATTGATAAAGAAATCGGTTTAGAATGGTCTCGTATTCCGCACTTCTATTACAACTATTACGTATATCAATACGCAACAG
GATTTAGTGCAGCAACAGCTTTGTCAAAACAAATTTTAGAAGAGGGACAACCAGCAGTAGAACGTTACATTAACGAATTC
TTAAAAGCTGGAAGCTCTGATTACCCAATTGAAGTGTTGAAAAAAGCAGGAGTAGATATGGCATCGCCAGAACCTGTAAA
AGAAGCATTACAAGTATTTGAAGAGAAGTTAAATGAATTAGAAGCACTATTGTTTGAAGAGAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.422

97.533

0.492

Multiple sequence alignment