Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   GH773_RS05775 Genome accession   NZ_CP045791
Coordinates   1120141..1122114 (-) Length   657 a.a.
NCBI ID   WP_002784244.1    Uniprot ID   -
Organism   Campylobacter coli strain CFSAN032805     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1115141..1127114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH773_RS05750 (GH773_05750) tsaE 1115329..1115736 (+) 408 WP_002776418.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  GH773_RS05755 (GH773_05755) lptB 1115729..1116457 (+) 729 WP_002776419.1 LPS export ABC transporter ATP-binding protein -
  GH773_RS05760 (GH773_05760) - 1116457..1117707 (+) 1251 WP_002781614.1 RNA polymerase factor sigma-54 -
  GH773_RS05765 (GH773_05765) - 1117895..1119319 (+) 1425 WP_002776421.1 anaerobic C4-dicarboxylate transporter -
  GH773_RS05770 (GH773_05770) - 1119354..1120010 (-) 657 Protein_1124 helicase-related protein -
  GH773_RS09430 - 1119993..1120106 (+) 114 Protein_1125 hypothetical protein -
  GH773_RS05775 (GH773_05775) uvrB 1120141..1122114 (-) 1974 WP_002784244.1 excinuclease ABC subunit UvrB Machinery gene
  GH773_RS05780 (GH773_05780) - 1122268..1122498 (+) 231 WP_002776426.1 hypothetical protein -
  GH773_RS05785 (GH773_05785) - 1122488..1122733 (+) 246 WP_002776428.1 hypothetical protein -
  GH773_RS05790 (GH773_05790) Cj0683 1122730..1123176 (+) 447 WP_002776437.1 type II secretion system protein Machinery gene
  GH773_RS05795 (GH773_05795) - 1123173..1125011 (+) 1839 WP_002776439.1 primosomal protein N' -
  GH773_RS05800 (GH773_05800) ispG 1125071..1126144 (+) 1074 WP_002776443.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  GH773_RS05805 (GH773_05805) flgH 1126228..1126926 (-) 699 WP_002787400.1 flagellar basal body L-ring protein FlgH -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 76054.45 Da        Isoelectric Point: 6.3996

>NTDB_id=346017 GH773_RS05775 WP_002784244.1 1120141..1122114(-) (uvrB) [Campylobacter coli strain CFSAN032805]
MLELTSDFKPSPDQEQAIQGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMSHNKSLCAQLYSEFKGFFSK
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
DMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKVKDLKRFIL
YPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKDCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQEAYNQKHNITPTSVKRHIEESLKNEENLGEIYRKGKKFEKMPANERAKIVKELHKQMLEAAKALE
FEKAATLRDEINKLKDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=346017 GH773_RS05775 WP_002784244.1 1120141..1122114(-) (uvrB) [Campylobacter coli strain CFSAN032805]
ATGTTAGAACTTACAAGCGATTTTAAACCAAGTCCTGATCAAGAACAAGCAATACAAGGTATTGTCAAAAGCATAAAAAA
AGGTAATAAATATCAAACCCTACTCGGCGTAACAGGAAGCGGAAAGACTTTTACCATGGCAAATGTCATAAAAGAACTCA
ATATGCCAACCCTTATCATGAGTCATAACAAAAGCCTTTGCGCCCAGCTTTATAGCGAATTTAAAGGTTTTTTTTCTAAG
AACCATGTGGAATATTTTATTTCTTATTATGATTATTATCAGCCTGAAGCTTATATACCGCGCACCGATGTTTTTATAGA
AAAAGATAGCTCCACAAATGAGGATCTAGAACGCTTAAGACTTAGCGCAACTGCTTCGCTTTTAAGCTATGAGGATGTGG
TTTGTATCGCTAGTGTCTCGGCTAATTATGGACTTGGAAATCCAAATGAATACATAGGAATGGTTTTAATCTTTGAACTA
GACATGCAAATTTCACAAAAAGAACTTTTAAAGAAACTTGTAGACATGGGTTATAAAAGAAATGATAATTTCTTTGATCG
TGCTGATTTTCGCGTACAAGGTGATATTATAGACATTTATCCAGCTTATTATGAAGATGAAGTAGTAAGACTTGAATTTT
TTGGCGATGAGCTTGATGCTATGTATCATTACAATGTTTTAGAAAATAAAAAAGTCAAAGATTTAAAACGCTTCATACTC
TATCCTACAAGCCAGTTTAGTGTAGGTGAAACAAGACTAAAACAAGCGATAAAAGACATAAAAGCAGAACTTAACGAACG
CCTTGCTTATTTTGAACATGAAAATAAACTCGTAGAATATCAACGCCTTAAACAAAGGGTTGAATTTGATCTTGAAATGC
TTACAAGCACAGGAATGTGTAAAGGCGTTGAAAATTATGCAAGACATTTAACAGGGCTTAAAGAAGGTGATACTCCTTAT
ACGCTTTTTGATTATTTTGCGATTAAAAATAGGAAATTTCTTGTTATAGTCGATGAAAGCCATGTTTCTTTACCACAATT
TAGAGGTATGTTTGCAGGAGATAGAAGCAGAAAACAAACCTTGGTAGATTATGGTTTTCGTCTTCCATCAGCTCTTGATA
ATCGTCCTTTAATGTTTGATGAATTTATCCATAAAGATTGTCAGTTTCTTTTTGTTTCAGCCACCCCTGCCCCGCTTGAG
CTTGAACTTAGCAAGGAAAATATCTTTCATCAAATTATGCGTCCAACAGGATTACTTGATCCTTTGATAGAACTTAAAGA
TAGCGATAATCAAGTTGAAATTTTATTTGATGAAGCCAAAAAAGTTATACAAAGAAACGAACGCGTTTTAGTTACTGTGT
TGACTAAAAAACTAGCTGAAGAGCTTACAAGGTATTATTTAGAACTTGGTATTAAAGTAAAATACATGCATTCAGATATT
GATGCAATAGAACGCAATGAAATCATAAGAGGCTTAAGAAGCGGTGCTTTTGATATGTTAATAGGTATAAATTTACTTAG
AGAAGGACTTGATTTGCCTGAGGTTTCGCTTATTGCCATTATGGACGCAGATAAGGAGGGTTTTTTAAGAAGCACTACAA
GTTTAATCCAAACCATGGGAAGAGCTGCTAGAAATGTCAATGGTAAAGTTTTACTCTTTTGCAAAAAGATTACAAAATCC
ATGCAAGAAGCTATGGATACTACAAATGAGCGTCGCAAACTTCAAGAAGCTTACAATCAAAAACATAACATCACCCCAAC
TTCAGTCAAGCGACACATCGAAGAAAGTTTAAAAAATGAAGAAAACTTAGGAGAAATTTATCGCAAAGGTAAAAAATTTG
AAAAAATGCCTGCTAATGAAAGAGCTAAAATCGTAAAAGAGCTTCATAAACAAATGCTTGAAGCTGCTAAAGCGCTCGAA
TTTGAAAAAGCAGCGACTTTAAGAGATGAGATCAATAAATTAAAAGATTTATAG

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(552-593)

Type III restriction enzyme, res subunit (ResIII)

(8-116)

UvrB/uvrC motif (UVR)

(623-656)

UvrB interaction domain (UvrB_inter)

(158-246)

Helicase conserved C-terminal domain (Helicase_C)

(439-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

50.305

99.848

0.502
  uvrB Streptococcus pneumoniae TIGR4

50.305

99.848

0.502
  uvrB Streptococcus pneumoniae D39

50.305

99.848

0.502