Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EXW49_RS07770 Genome accession   NZ_CP036023
Coordinates   1515959..1516561 (-) Length   200 a.a.
NCBI ID   WP_016101472.1    Uniprot ID   R8HTI8
Organism   Bacillus mycoides strain BPN52/2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1510959..1521561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW49_RS07750 (EXW49_07870) dnaD 1511250..1511957 (+) 708 WP_201038504.1 DNA replication protein DnaD -
  EXW49_RS07755 (EXW49_07875) nth 1511973..1512620 (+) 648 WP_002030794.1 endonuclease III -
  EXW49_RS07760 (EXW49_07880) - 1512624..1513142 (+) 519 WP_002030796.1 YpoC family protein -
  EXW49_RS07765 (EXW49_07885) - 1513169..1515892 (-) 2724 WP_215588888.1 penicillin-binding protein 1A -
  EXW49_RS07770 (EXW49_07890) recU 1515959..1516561 (-) 603 WP_016101472.1 Holliday junction resolvase RecU Machinery gene
  EXW49_RS07775 (EXW49_07895) - 1516665..1517690 (+) 1026 WP_016101471.1 DUF2515 domain-containing protein -
  EXW49_RS29965 - 1518034..1518180 (-) 147 WP_306302660.1 phage portal protein -
  EXW49_RS07780 (EXW49_07900) - 1518299..1518541 (+) 243 WP_002030820.1 hypothetical protein -
  EXW49_RS07785 (EXW49_07905) - 1518557..1518901 (+) 345 WP_002011864.1 YppE family protein -
  EXW49_RS07790 (EXW49_07910) - 1518927..1519118 (-) 192 WP_002030817.1 YppF family protein -
  EXW49_RS07795 (EXW49_07915) - 1519296..1519934 (+) 639 WP_016101470.1 YppG family protein -
  EXW49_RS07800 (EXW49_07920) - 1520091..1520489 (+) 399 WP_215588889.1 CotD family spore coat protein -
  EXW49_RS07805 (EXW49_07925) - 1520546..1521100 (+) 555 WP_002030808.1 DUF1273 domain-containing protein -
  EXW49_RS07810 (EXW49_07930) gpsB 1521198..1521533 (+) 336 WP_000622426.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23346.61 Da        Isoelectric Point: 9.6726

>NTDB_id=345978 EXW49_RS07770 WP_016101472.1 1515959..1516561(-) (recU) [Bacillus mycoides strain BPN52/2]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNDTNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=345978 EXW49_RS07770 WP_016101472.1 1515959..1516561(-) (recU) [Bacillus mycoides strain BPN52/2]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACAATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGACACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCACCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8HTI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625

Multiple sequence alignment