Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GHR20_RS37745 Genome accession   NZ_CP045740
Coordinates   6535712..6536443 (-) Length   243 a.a.
NCBI ID   WP_243878150.1    Uniprot ID   -
Organism   Streptomyces sp. SUK 48     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6530712..6541443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - rcrQ 6535712..6536443 (-) 732 - - Regulator

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26566.27 Da        Isoelectric Point: 7.4234

>NTDB_id=345762 GHR20_RS37745 WP_243878150.1 6535712..6536443(-) (rcrQ) [Streptomyces sp. SUK 48]
MEFDGVWFRYPGTTPWALADVSFRVAPGETLALVGASGAGKSTAARLQLRFYDPDRGAVRLDGTDLRDLQLADVRESVAV
VLQETLVFHGTVRENIAYGRPEAAEAEIVAAARAADAHEFIERLPEGYDTLVGQRGRTLSGGQCQRLAIARAMVRDAPVL
LLDEPTTGLDARSGRRIMEPLRRLMAGRTTIVISHNLLTVRDATRIVVLDRGRVVEDGAHKDLLVRDGTYARLHRLNTGT
VVS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=345762 GHR20_RS37745 WP_243878150.1 6535712..6536443(-) (rcrQ) [Streptomyces sp. SUK 48]
GTGGAGTTCGACGGCGTCTGGTTCCGCTACCCGGGCACCACGCCGTGGGCCCTCGCGGACGTGTCCTTCCGGGTGGCGCC
CGGCGAGACGCTGGCGCTGGTCGGGGCGAGCGGCGCGGGCAAGTCCACCGCCGCGCGGCTCCAGCTGCGGTTCTACGACC
CCGACCGGGGCGCGGTCCGGCTCGACGGCACCGATCTGCGCGATCTGCAGCTGGCCGACGTGCGCGAGAGCGTCGCGGTG
GTACTCCAGGAGACCCTGGTCTTCCACGGCACGGTGCGGGAGAACATCGCCTACGGCCGCCCGGAAGCCGCCGAGGCGGA
GATCGTCGCGGCGGCGCGCGCGGCGGACGCGCACGAGTTCATCGAACGGCTCCCGGAGGGCTACGACACCCTCGTCGGCC
AGCGCGGCCGTACCCTGTCCGGCGGCCAGTGCCAGCGCCTCGCGATCGCCCGCGCGATGGTCAGGGACGCGCCGGTGCTG
CTGCTGGACGAGCCGACCACCGGGCTGGACGCGCGTTCCGGCCGCCGGATCATGGAGCCGCTGCGCCGGCTGATGGCCGG
GCGGACCACCATCGTCATCTCGCACAACCTGCTCACCGTGCGCGACGCCACCCGGATCGTGGTGCTCGACCGGGGCCGGG
TCGTGGAGGACGGCGCCCACAAGGATCTGCTGGTGCGCGACGGGACGTACGCCCGGCTGCACCGGCTGAACACCGGCACC
GTGGTGTCGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(18-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.949

97.119

0.407
  comA Streptococcus pneumoniae D39

40.171

96.296

0.387
  comA Streptococcus pneumoniae Rx1

40.171

96.296

0.387
  comA Streptococcus pneumoniae R6

40.171

96.296

0.387
  comA Streptococcus pneumoniae TIGR4

39.744

96.296

0.383
  comA Streptococcus mitis NCTC 12261

39.316

96.296

0.379
  comA Streptococcus mitis SK321

38.889

96.296

0.374
  rcrP Streptococcus mutans UA159

37.712

97.119

0.366
  comA Streptococcus gordonii str. Challis substr. CH1

38.034

96.296

0.366