Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   GHT02_RS15595 Genome accession   NZ_CP045712
Coordinates   3272799..3273431 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain FHI_NMBU_11     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3267799..3278431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GHT02_RS15570 (GHT02_15555) yhfG 3267931..3268098 (+) 168 WP_000736860.1 YhfG family protein -
  GHT02_RS15575 (GHT02_15560) fic 3268088..3268690 (+) 603 WP_086218925.1 putative adenosine monophosphate-protein transferase Fic -
  GHT02_RS15580 (GHT02_15565) pabA 3268722..3269285 (+) 564 WP_000601850.1 aminodeoxychorismate synthase component 2 -
  GHT02_RS15585 (GHT02_15570) argD 3269371..3270591 (+) 1221 WP_001706603.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  GHT02_RS15590 (GHT02_15575) yhfK 3270658..3272748 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  GHT02_RS15595 (GHT02_15580) crp 3272799..3273431 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  GHT02_RS15600 (GHT02_15585) yhfA 3273733..3274137 (+) 405 WP_001148908.1 OsmC family protein -
  GHT02_RS15605 (GHT02_15590) prkB 3274192..3275061 (-) 870 WP_001274680.1 phosphoribulokinase -
  GHT02_RS15610 (GHT02_15595) yheU 3275115..3275333 (-) 219 WP_000907085.1 YheU family protein -
  GHT02_RS15615 (GHT02_15600) yheT 3275327..3276349 (-) 1023 WP_000057403.1 hydrolase -
  GHT02_RS15620 (GHT02_15605) yheS 3276349..3278262 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=345476 GHT02_RS15595 WP_000242755.1 3272799..3273431(-) (crp) [Escherichia coli strain FHI_NMBU_11]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=345476 GHT02_RS15595 WP_000242755.1 3272799..3273431(-) (crp) [Escherichia coli strain FHI_NMBU_11]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TTTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment