Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   EXW30_RS24790 Genome accession   NZ_CP035962
Coordinates   4813483..4814832 (-) Length   449 a.a.
NCBI ID   WP_215570662.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN07/3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4808483..4819832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW30_RS24765 (EXW30_25250) - 4810040..4810978 (-) 939 WP_078173383.1 helix-turn-helix transcriptional regulator -
  EXW30_RS24770 (EXW30_25255) - 4811061..4811504 (+) 444 WP_078179455.1 VOC family protein -
  EXW30_RS24775 (EXW30_25260) hpf 4811591..4812133 (-) 543 WP_002159874.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  EXW30_RS24780 (EXW30_25265) cspC 4812455..4812652 (-) 198 WP_033710669.1 cold shock protein CspC -
  EXW30_RS24785 (EXW30_25270) - 4812779..4813483 (-) 705 WP_002112877.1 ComF family protein -
  EXW30_RS24790 (EXW30_25275) comFA 4813483..4814832 (-) 1350 WP_215570662.1 ATP-dependent helicase ComFA Machinery gene
  EXW30_RS24795 (EXW30_25280) - 4814963..4816315 (-) 1353 WP_215569454.1 NlpC/P60 family protein -
  EXW30_RS24800 (EXW30_25285) - 4816548..4816862 (-) 315 WP_002159869.1 winged helix-turn-helix transcriptional regulator -
  EXW30_RS24805 (EXW30_25290) - 4817036..4817878 (-) 843 WP_002112883.1 DegV family protein -
  EXW30_RS24810 (EXW30_25295) - 4818117..4818752 (+) 636 WP_078179458.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50891.20 Da        Isoelectric Point: 9.2546

>NTDB_id=345337 EXW30_RS24790 WP_215570662.1 4813483..4814832(-) (comFA) [Bacillus mycoides strain BPN07/3]
MLAGRQLLLEELSSELQDKLDHLKENRDVVCVQGVSKKSSKYMCQRCGNIEQRLFASFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIAEISGENYLNPLQWEGVLSAGQELAAQSVVDAVKQKESFFIWAVCGAGKTEMLFRGIAEALQKGERVCIAT
PRTDVVLELAPRLQEVFPNINVAALYGGSLDREKDAALIVATTHQLLRYYRAFHVMIVDEIDAFPYHADKMLHYAVNEAM
KEEAARIYLTATPDEKWKRKLRNGKQKGVIISGRYHRHPLPVPIFRWCGNWKKGLMRKKIPRALLQWLNMYLSKRYPIFL
FVPHVRYVEEISQLLKSLNNQIDGVHAEDPARKEKVVAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSSDEPHGDVIYFHYGKTEAMVRAKKHIQSMNKNAQEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=345337 EXW30_RS24790 WP_215570662.1 4813483..4814832(-) (comFA) [Bacillus mycoides strain BPN07/3]
ATGTTAGCTGGTAGACAGTTATTGTTAGAAGAACTTTCTTCAGAGTTACAGGATAAATTGGATCATTTGAAAGAGAATCG
AGACGTCGTTTGTGTACAAGGGGTAAGTAAGAAATCTTCAAAATATATGTGCCAGCGCTGCGGAAATATAGAGCAGAGAC
TATTTGCATCGTTTCTATGCAAAAGGTGCAGTAAAGTATGCACGTATTGCCGGAAGTGCATAACGATGGGCAGGGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAATAAGCGGAGAAAATTATTTGAATCCGTTACAGTGGGAAGGCGTTTT
GTCTGCTGGTCAGGAGTTAGCTGCGCAAAGTGTCGTTGACGCTGTTAAGCAGAAAGAATCATTTTTTATTTGGGCGGTGT
GCGGGGCTGGAAAAACAGAAATGTTGTTTCGCGGAATTGCAGAGGCACTACAAAAGGGAGAGAGAGTTTGTATTGCAACG
CCGAGAACGGACGTTGTACTTGAATTAGCACCAAGATTACAAGAAGTGTTTCCAAATATAAATGTAGCTGCTTTATACGG
AGGGAGTTTAGACCGAGAAAAAGATGCGGCGTTAATCGTTGCAACTACACATCAATTGTTACGTTATTATAGGGCGTTCC
ATGTCATGATTGTAGATGAGATAGATGCTTTTCCGTATCATGCGGATAAGATGTTGCATTATGCAGTAAACGAAGCGATG
AAAGAGGAGGCAGCACGTATTTATTTAACTGCAACTCCAGATGAAAAGTGGAAGCGTAAATTGCGGAATGGTAAGCAAAA
AGGGGTTATTATTTCAGGACGTTATCATCGTCATCCATTGCCAGTCCCGATATTTCGGTGGTGCGGAAATTGGAAAAAGG
GTCTTATGCGTAAAAAAATTCCTCGTGCTTTATTACAATGGTTAAATATGTACTTATCTAAACGATACCCCATTTTTCTA
TTTGTTCCTCATGTGCGATATGTAGAAGAAATTAGTCAGTTATTAAAATCATTAAACAATCAAATTGACGGTGTGCATGC
AGAAGATCCGGCGAGAAAAGAGAAGGTAGTAGCTTTCAGAAAGGGAGAAATCCCTTTATTAGTTACAACGACAATTTTGG
AGCGAGGAGTAACTGTGAAAAATTTACAAGTGGCAGTTTTAGGAGCTGAGGAAGAAATATTTTCAGAAAGTGCTCTCGTT
CAAATTGCAGGGCGTGCTGGCAGAAGCTCTGATGAACCGCATGGAGATGTCATCTATTTTCATTATGGAAAGACAGAGGC
GATGGTGCGTGCGAAAAAACATATTCAAAGTATGAATAAGAATGCTCAAGAACAAGGATTGATAGATTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(313-409)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.794

98.218

0.499
  comFA Latilactobacillus sakei subsp. sakei 23K

41.519

87.973

0.365

Multiple sequence alignment